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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttccaattgaaaatcaagttcttgatatctgcacatatatgtcagacgtgtctgggataattgacttgatttccattcaaacaattgtag

Basic information

species Oryza sativa
transcript LOC_Os12g03470.5
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g03470.5 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G077299_T03 (Zea mays), 5'ss of exon 6
GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttccaattgaaaatcaagttcttgatatctgcacatatatgtca--------------gacgtgtctg-ggataattgacttgatttccattcaaacaattgtag
|||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| |||||||||  |  | |||||  ||| | ||||| ||||   ||      |  ||||||  |               |    | |  ||||||| |||| |||| |   | |  | |||||||
GGACATGGCTTTCGCACAGAACTTATATCCATGATTTTGGATTTAAAACCACGATTCTTGAGATTTCCTGgtatgctccgtgttttcttatttagaatcaggttcccaatgctaagatgtatatgatatattgcaatatattaatacatttaaggataatggactagattgca--tgatgctattgtag

upper sequence: LOC_Os12g03470.5 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G006130_T05 (Zea mays), 5'ss of exon 19
------------------------------GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttccaattgaaaatcaagttcttgatatctgcacatatatg------tcagacgtgtctgggataattgacttgatttccattcaaacaattgtag
                              ||||||||||| ||||||||||| ||||| ||| | ||||| || ||||||||||||||||| || |||||||||  || | |||||  ||| |||||||||||||| || | || ||||||||       ||| |  ||| |  |||| ||||  |   |||||| | | | | |||||
ATTTATAGCTGGTTCTCTCTGTACACACAGGGACATGGTTTCCGCACAGAACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGGTTTCCTGgtatgcactgtgttttcacatttaaaatcaagttcttcatgtttggacatatattacgtgttcatagatgtttcagatatttga--tagattccatgcga-ctactgtag

upper sequence: LOC_Os12g03470.5 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G006130_T01 (Zea mays), 5'ss of exon 7
GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttccaattgaaaatcaagttcttgatatctgcacatatatg------tcagacgtgtctgggataattgacttgatttccattcaaacaattgtag
||||||||||| ||||||||||| ||||| ||| | ||||| || |||||||||||||||||||| |||||||||  || | |||||  ||| |||||||||||||| || | || ||||||||       ||| |  ||| |  |||| ||||  |   |||||| | | | | |||||
GGACATGGTTTCCGCACAGAACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGATTTCCTGgtatgcactgtgttttcacatttaaaatcaagttcttcatgtttggacatatattatgtgttcatagatgtttcagatatttga--tagattccatgcga-ctactgtag

upper sequence: LOC_Os12g03470.5 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G006130_T02 (Zea mays), 5'ss of exon 7
GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttccaattgaaaatcaagttcttgatatctgcacatatatg------tcagacgtgtctgggataattgacttgatttccattcaaacaattgtag
||||||||||| ||||||||||| ||||| ||| | ||||| || |||||||||||||||||||| |||||||||  || | |||||  ||| |||||||||||||| || | || ||||||||       ||| |  ||| |  |||| ||||  |   |||||| | |          
GGACATGGTTTCCGCACAGAACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGATTTCCTGgtatgcactgtgttttcacatttaaaatcaagttcttcatgtttggacatatattatgtgttcatagatgtttcagatatttga--tagattccatgcgact--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29667817|gb|CB664092.1|CB664092
EST:     ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG                         GAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
genomic: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
EST: gi|29627933|gb|CB632944.1|CB632944
EST:     ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG                         GAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
genomic: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
EST: gi|33677669|gb|CF305908.1|CF305908
EST:     ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG                         GAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
genomic: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
EST: gi|55410431|gb|CV722807.1|CV722807
EST:     CTAATATCTATGATGTTGGACTTATATTCCACGATTCTTGAGATTCCCTG                         GAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
genomic: CTAATATCTATGATGTTGGACTTA-AAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
EST: gi|29630007|gb|CB635016.1|CB635016
EST:     ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG                         GAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
genomic: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
EST: gi|33675310|gb|CF303549.1|CF303549
EST:     ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG                         GAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG
genomic: ACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTCGTGGAGGGTGAATGGTTAAGAAACGCATTCAGGTGGAGGG