1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaaagatgctaggttggtcctttcacctcaaatatacaactgtaccttaatgttatgctaattttttctgtag
species | Oryza sativa |
transcript | LOC_Os12g03060.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAATEST: gi|29657294|gb|CB653569.1|CB653569
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAATEST: gi|29687248|gb|CB683523.1|CB683523
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAATEST: gi|163926921|gb|EG715146.1|EG715146
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAATEST: gi|38478567|gb|CF962700.1|CF962700
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATTACACAAAATCCGAAG GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAATEST: gi|29657293|gb|CB653568.1|CB653568
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAATEST: gi|29618675|gb|CB623687.1|CB623687
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAATEST: gi|58694491|gb|CK083178.1|CK083178
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAATEST: gi|27576657|gb|CA999351.1|CA999351
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAATEST: gi|86831384|gb|CI299442.1|CI299442
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAATEST: gi|29686826|gb|CB683101.1|CB683101
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
EST: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAT GGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
genomic: TCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaa ... ttttctgtagGGGAGTTACTTTCTGAGCTGGTTACTCTGCTGAAGAAGTCTGGAGCTAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAGgttaggtcaaagatgctaggttggtcctttcacctcaaatatacaactgtaccttaatgttatgctaattttttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG