1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTCCGTCGTTACATGGAAAAGAAGCTTCGCTCTGATGCTGGATTCCCAGGAACCCCTATTCGTTTATTGTGGCGTAGCAGGAAGAGACCAGATAAAAAAGgtgagtcgatatcaaagtgcccacttgcataatctcaatgattttaactgaataatttttctactatcatacctgcatgcatagaattagaaaagattat...
species | Oryza sativa |
transcript | LOC_Os11g41910.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACCCCTATTCGTTTATTGTGGCGTAGCAGGAAGAGACCAGATCAAAAAG GTTAATCTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGGEST: gi|88282198|gb|CI403594.1|CI403594
genomic: AACCCCTATTCGTTTATTGTGGCGTAGCAGGAAGAGACCAGATAAAAAAGgtgagtcgat ... ttcttggcagGTAAATCTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGG
EST: CCTATTCGTTTATTGTGGCGTAGCAGGAAGAGACCAGATAAAAAAG GTAAATCTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGGEST: gi|44665269|gb|CR278703.1|CR278703
genomic: CCTATTCGTTTATTGTGGCGTAGCAGGAAGAGACCAGATAAAAAAGgtgagtcgat ... ttcttggcagGTAAATCTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGG
EST: AACCCCTATTCGTTTATTGTGGCGTAGCAGGAAGAGACCAGATAAAAAAG GTAAATCTGCAGACAACAGCTTGCAGAACTCAGTAATCCCAAGCAGAATGGEST: gi|89171902|gb|CI040412.1|CI040412
genomic: AACCCCTATTCGTTTATTGTGGCGTAGCAGGAAGAGACCAGATAAAAAAGgtgagtcgat ... ttcttggcagGTAAATCTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGG
EST: AACCCCTATTCGTTTATTGTGGCGTAGCAGGAAGAGACCAGATAAAAAAG GTAAATCTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGGEST: gi|86867857|gb|CI342754.1|CI342754
genomic: AACCCCTATTCGTTTATTGTGGCGTAGCAGGAAGAGACCAGATAAAAAAGgtgagtcgat ... ttcttggcagGTAAATCTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGG
EST: AACCCCTATTCGTTTATTGTGGCGTAGCAGGAAGAGACCAGATAAAAAAG GTAAATCTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGG
genomic: AACCCCTATTCGTTTATTGTGGCGTAGCAGGAAGAGACCAGATAAAAAAGgtgagtcgat ... ttcttggcagGTAAATCTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCGTCGTTACATGGAAAAGAAGCTTCGCTCTGATGCTGGATTCCCAGGAACCCCTATTCGTTTATTGTGGCGTAGCAGGAAGAGACCAGATAAAAAAGgtgagtcgatatcaaagtgcccacttgcataatctcaatgattttaactgaataatttttctactatcatacctgcatgcatagaattagaaaagattat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaga