1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGGgtcagtactcagcaacacaaagataaatatatgaacatacattgaataattgcttgctcttcattgcgctcatgaaataattcgtaccaagtcttgattcacctgtttcacacag
species | Oryza sativa |
transcript | LOC_Os11g40080.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGTTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGG GCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATTCTATGCTGGATTTEST: gi|86900533|gb|CI298368.1|CI298368
genomic: GAGAAGTTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGGgtcagtactc ... tttcacacagGCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATTCTATGCTGGATTT
EST: TTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGG GCTATCAAAGCACTATTTCCTCEST: gi|58689879|gb|CK078566.1|CK078566
genomic: TTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGGgtcagtactc ... tttcacacagGCTATCAAAGCACTATTTCCTC
EST: TTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGG GCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATTCTATGCTGGATTT
genomic: TTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGGgtcagtactc ... tttcacacagGCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATTCTATGCTGGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGGgtcagtactcagcaacacaaagataaatatatgaacatacattgaataattgcttgctcttcattgcgctcatgaaataattcgtaccaagtcttgattcacctgtttcacacag
- - - - - - CTCCTC