1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTTCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgctgaattttctgggctatttattttttatgaaccttgatccacagacttcattgtccatgcctccagttcatttatttctgcttattgcgttgttgcag
species | Oryza sativa |
transcript | LOC_Os11g36070.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|88273561|gb|CI393967.1|CI393967
genomic: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|27576960|gb|CA999654.1|CA999654
genomic: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: CTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|27578183|gb|CB000878.1|CB000878
genomic: CTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: CTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGATEST: gi|25778077|gb|CA752829.1|CA752829
genomic: CTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
EST: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT ATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
genomic: TCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgc ... gttgttgcagATATCGGATACGGACAATATAAATATAGAGACACATGGATTTAGTAGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTTCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACTgtgcgtatgctgaattttctgggctatttattttttatgaaccttgatccacagacttcattgtccatgcctccagttcatttatttctgcttattgcgttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG