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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGTGTGACAGGCCTCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAGgtattgtgataatatggataaaactcactgtcttaaatgaacatgcttactcctttgaagtgtgtggtttaattattttcaatgggtggtaaggttctag

Basic information

species Oryza sativa
transcript LOC_Os11g23790.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g23790.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G079452_T02 (Zea mays), 5'ss of exon 7
GGAAGTGTGACAGGCCTCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAGgtattg-tgataatatggataaaactcactgtcttaaatgaacatgcttactcctttgaagtgtgtggtttaattattttcaatgg-gtggtaaggttctag-
||||||||  | |||| |||||||||||||||||| || ||||||||||||||||| ||||| ||||||||| |   | | |   |      ||     || | |  |  |  ||  | | |   |  ||||  | |  || | | ||||   || | | || | ||  
GGAAGTGTATCTGGCCACAAGCCACGGCCAGTCCGCCCTGGAATGTTCCTTGAGACTGTTTCCAAGgtattgatctcattctttgttttgtacaacacattcact--attttttttttgcatgacatagtgttttctttttgtctgcaattttgtcgcatggctgtaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87018909|gb|CI256794.1|CI256794
EST:     TCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAG                         GTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAAT
genomic: TCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAGgtattgtgat ... aaggttctagGTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAAT
EST: gi|88216323|gb|CI216172.1|CI216172
EST:     TCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAG                         GTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAAT
genomic: TCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAGgtattgtgat ... aaggttctagGTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAAT
EST: gi|86841245|gb|CI342970.1|CI342970
EST:     TCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAG                         GTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAAT
genomic: TCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAGgtattgtgat ... aaggttctagGTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAAT