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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTCTCCGCCAAAATGGACAAATGGAAAATGGATATGCCATTTCACCAAGCCTCTTGCATAGCAATAACCACTTGGCAAACTGTGACAATGAGAGTGTgtaagtaacagaccatcttagttctatggtttccttctacataataaacaatcgcatgcaatctttatagagcaaacctagcttcatacaacatgcaaat...

Basic information

species Oryza sativa
transcript LOC_Os11g13990.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g13990.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G136665_T01 (Zea mays), 5'ss of exon 6
ATGGTCTCCGCCAAAATGGACAAATGGAAAATGGATATGCCATTTCACCAAGCCTCTTGCATAGCAATAACCACTTGGCAAACTGTGACAATGAGAGTGTgtaagtaacagaccatcttagttctatggtttccttctacataataaacaatcgcatgcaatctttatagagcaaacctagcttcatacaacatgcaaat---
    |    | ||| ||| ||| ||||| | ||| |||||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| |||||||||||| |    ||    | | |  | | | |  |   |  ||    |   ||    |||||| |  |    |    ||  | | |  |  ||| |   
CCCATAATGGTCAAGATGTACAGATGGAGAGTGGTTATGCCATTTCACCAAGCCTTTTGCATAGAAATAACCATTTGGCAAATTGTGACAATGAGAGCGTgtaagtaacatatttact---atttgtaatctgcatgaatccagaaatagttttgatcatgtctttagaaggttggcggtactagaaaaagtaaacaactgca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86417806|gb|CI032015.1|CI032015
EST:     AGCCTCTTGCATAGCAATAACCACTTGGCAAACTGTGACAATGAGAGTGT                         GGTCTCTGAGCCCGGAGCACCTGGCTGTCATGGTCTGTTCCCCTGCTG-AA
genomic: AGCCTCTTGCATAGCAATAACCACTTGGCAAACTGTGACAATGAGAGTGTgtaagtaaca ... tgatttgcagGGTCTCTGAGCCCGGAGCACCTGGCTGTCATGGTCTGTTCCCCTGCTGGAA
EST: gi|88845313|gb|CI084238.1|CI084238
EST:     AGCCTCTTGCATAGCAATAACCACTTGGCAAACTGTGACAATGAGAGTGT                         GGTCTCTGAGCCCGGAGCACCTGGCTGTCATGGTCTGTTCCCCTGCTGGAA
genomic: AGCCTCTTGCATAGCAATAACCACTTGGCAAACTGTGACAATGAGAGTGTgtaagtaaca ... tgatttgcagGGTCTCTGAGCCCGGAGCACCTGGCTGTCATGGTCTGTTCCCCTGCTGGAA