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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGCTCGCCGTCCATTTTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaaccacacttcacatcctgccaatgccaatgaacaaaccatcttactgaaaaacagacacaaaacaatcagaaatgctctgcttggcctaacatttccttttgtattaccag

Basic information

species Oryza sativa
transcript LOC_Os11g04210.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g04210.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G095141_T02 (Zea mays), 5'ss of exon 8
GCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGCTCGCCGTCCATTTTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaaccacacttcacatcctgccaatg-ccaatga-acaaaccatcttactgaaaaacagacacaaaacaatcagaaatgctctgcttggcctaacatttccttttgtattaccag
               ||| ||||| || ||||||||| | ||||| ||||| || || || ||||| || |||||||||||||| || ||||| || |||||||||||    ||   |  |   | || ||  | | || |   |      || ||   |||| ||||| | ||  || | |  |  |  ||| |    ||                   
---------------GTCGTTTGTCCCGGTGGACAAGATTGCCGTTCATTTCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAGTAAGCAAAGCAACGgtatgtttcgtcattggtctacgacattcatagagata-tgcctaacacacacaga-cacacacatacacattcattgtctcgtcag------------------

upper sequence: LOC_Os11g04210.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G095141_T01 (Zea mays), 5'ss of exon 6
GCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGCTCGCCGTCCATTTTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaaccacacttcacatcctgccaatg-ccaatga-acaaaccatcttactgaaaaacagacacaaaacaatcagaaatgctctgcttggcctaacatttccttttgtattaccag
|||| ||||||| ||||| ||||| || ||||||||| | ||||| ||||| || || || ||||| || |||||||||||||| || ||||| || |||||||||||    ||   |  |   | || ||  | | || |   |      || ||   |||| ||||| | ||  || | |  |  |  ||| |    ||                   
GCTTCAAGCTGTCATGTCGTTTGTCCCGGTGGACAAGATTGCCGTTCATTTCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaagcaacggtatgtttcgtcattggtctacgacattcatagagata-tgcctaacacacacaga-cacacacatacacattcattgtctcgtcag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88840221|gb|CI079675.1|CI079675
EST:     TTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAA                         CTGGGGATCAACATAGTGGACTTATCAGTGTCAGGACTGGGAGGCTGCCCA
genomic: TTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaacc ... gtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
EST: gi|86884405|gb|CI336973.1|CI336973
EST:     CATACTGGTCTCTCTCCAA                         CTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
genomic: CATACTGGTCTCTCTCCAAgtaagcaacc ... gtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
EST: gi|88481344|gb|CI418615.1|CI418615
EST:     TTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAA                         CTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
genomic: TTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaacc ... gtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
EST: gi|88511552|gb|CI439058.1|CI439058
EST:     TTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAA                         CTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
genomic: TTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaacc ... gtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA