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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCATGGCTTTCGCAAGGAACTACTATACATGCTTTTGGAATTAAAACCACAGTTCCTACGCTTTCCTGgtatttcttgttccctaaccaaaataaactattaggggctttgaacatatgccttggtttttcgcatatttacgatcactgtattatatccagttatttc...

Basic information

species Oryza sativa
transcript LOC_Os11g03780.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33796127|gb|CF323929.1|CF323929
EST:     ACTACTATACATGCTTTTGGAATTAAAACCACAGTTCCTACGCTTTC-TG                         GGGGGTGCTTTGTTGAAGGCGATTGGTTAAGAAATGCTTTCAGGTGGAGGG
genomic: ACTACTATACATGCTTTTGGAATTAAAACCACAGTTCCTACGCTTTCCTGgtatttcttg ... cttttgatagGGGGGTGCTTTGTTGAAGGCGATTGGTTAAGAAATGCTTTCAGGTGGAGGG
EST: gi|33796277|gb|CF324005.1|CF324005
EST:     ACTACTATACATGCTTTTGGAATTAAAACCACAGTTCCTACGCTTTCCTG                         GGGGGTGCTTTGTTGAAGGCGATTGGTTAAGAAATGCTTTCAGGTGGAGGG
genomic: ACTACTATACATGCTTTTGGAATTAAAACCACAGTTCCTACGCTTTCCTGgtatttcttg ... cttttgatagGGGGGTGCTTTGTTGAAGGCGATTGGTTAAGAAATGCTTTCAGGTGGAGGG
EST: gi|88722894|gb|CI746404.1|CI746404
EST:     ACTACTATACATGCTTTTGGAATTAAAACCACAGTTCCTACGCTTTCCTG                         GGGGGTGCTTTGTTGAAGGCGATTGGTTAAGAAATGCTTTCAGGTGGAGGG
genomic: ACTACTATACATGCTTTTGGAATTAAAACCACAGTTCCTACGCTTTCCTGgtatttcttg ... cttttgatagGGGGGTGCTTTGTTGAAGGCGATTGGTTAAGAAATGCTTTCAGGTGGAGGG