Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATGGTTTTCGCACAGAACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttcccattgaaaatcaagttcttgatatgtacatatatgccagacatgtctgggataattgacttgatttacattcaaacaattgtag

Basic information

species Oryza sativa
transcript LOC_Os11g03730.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g03730.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G077299_T03 (Zea mays), 5'ss of exon 6
GGACATGGTTTTCGCACAGAACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttcccattgaaaatcaagttcttgat------atgtacat-atatgcca---------gacatgtctg-ggataattgacttgatttacattcaaacaattgtag
|||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||  |  | |||||  ||| | ||||| ||||   ||      ||||| || ||||              | |  | |  ||||||| |||| ||||  |||  |  | |||||||
GGACATGGCTTTCGCACAGAACTTATATCCATGATTTTGGATTTAAAACCACGATTCTTGAGATTTCCTGgtatgctccgtgttttcttatttagaatcaggttcccaatgctaagatgtatatgatatattgcaatatattaatacatttaaggataatggactagatt-gcatg-atgctattgtag

upper sequence: LOC_Os11g03730.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G006130_T05 (Zea mays), 5'ss of exon 19
------------------------------GGACATGGTTTTCGCACAGAACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttcccattgaaaatcaagttcttgatatgtacatatatgc--------cagacatgtctgggataattgacttgatttacattcaaacaattgtag
                              ||||||||||| ||||||||||||||||| ||| | ||||| || ||||||||||||||||| || |||||||||  || | ||||| |||| |||||||||||||| || | |  | ||||          || | |||| |  |||| ||||  |   || ||| | | | | |||||
ATTTATAGCTGGTTCTCTCTGTACACACAGGGACATGGTTTCCGCACAGAACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGGTTTCCTGgtatgcactgtgttttcacatttaaaatcaagttcttcatgtttggacatatattacgtgttcatagatgtttcagatatttga--tagattccatgcga-ctactgtag

upper sequence: LOC_Os11g03730.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G006130_T01 (Zea mays), 5'ss of exon 7
GGACATGGTTTTCGCACAGAACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttcccattgaaaatcaagttcttgatatgtacatatatgc--------cagacatgtctgggataattgacttgatttacattcaaacaattgtag
||||||||||| ||||||||||||||||| ||| | ||||| || |||||||||||||||||||| |||||||||  || | ||||| |||| |||||||||||||| || | |  | ||||          || | |||| |  |||| ||||  |   || ||| | | | | |||||
GGACATGGTTTCCGCACAGAACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGATTTCCTGgtatgcactgtgttttcacatttaaaatcaagttcttcatgtttggacatatattatgtgttcatagatgtttcagatatttga--tagattccatgcga-ctactgtag

upper sequence: LOC_Os11g03730.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G006130_T02 (Zea mays), 5'ss of exon 7
GGACATGGTTTTCGCACAGAACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttcccattgaaaatcaagttcttgatatgtacatatatgccagacatgtctgggataattgacttgatttaca---ttcaaacaattgtag
||||||||||| ||||||||||||||||| ||| | ||||| || |||||||||||||||||||| |||||||||  || | ||||| |||| |||||||||||||| || | |  | ||||   |    | ||   |||  || |  |  || | |   | ||  | | |    
GGACATGGTTTCCGCACAGAACTTATATCCATGCTTTTGGATTTGAAACCACGATTCTTGAGATTTCCTGgtatgcactgtgttttcacatttaaaatcaagttcttcatgtttggacatatattatgtgt-tcatagatgtttcagatatttgatagattccatgcgact----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29672785|gb|CB669060.1|CB669060
EST:     ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG                         GAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
genomic: ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
EST: gi|29644765|gb|CB649772.1|CB649772
EST:     ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG                         GAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
genomic: ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
EST: gi|29646541|gb|CB651548.1|CB651548
EST:     ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG                         GAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
genomic: ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
EST: gi|29632787|gb|CB637796.1|CB637796
EST:     ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTG                         GAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATCCATGTGGAGGG
genomic: ACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
EST: gi|29636288|gb|CB641297.1|CB641297
EST:     TATATCTATGATGTTGGACTTAAAACCACAATTCTTGAGATTCCCTG                         GAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG
genomic: TATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagcta ... acaattgtagGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGG