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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGATGAGTTTAACGCCAAAATATCTGACTTTGGTTTGGCCAAGATGCTAGGTGCTGGTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGGgtaagtttttcatgcctttgtataataaattgaggcatgttctctttgtattacgttcaaatcttggccactgtaatttcagaaaaattctgttggtgctaatcactaatggtactcaacattgtgttattattttgcag

Basic information

species Oryza sativa
transcript LOC_Os11g01740.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g01740.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G162702_T01 (Zea mays), 5'ss of exon 4
TTGATGATGAGTTTAACGCCAAAATATCTGACTTTGGTTTGGCCAAGATGCTAGGTGCTGGTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGGgtaagtttttca-tgcctttgtataataaattgaggcatgttctctttgtattacgttcaaatcttggccactgtaatttcagaaaaattctgttggtgctaatcactaatggtactcaacattgtgtt-attattttgcag
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TTGACGATGAGTTTAATGCCAAAATATCAGACTTTGGTTTGGCCAAGATGCTTGGTGCTGGTAAAAGCCATATTGCTACACGAGTTATGGGTACCTTTGGgtaagttttttggtactgttgtat----atctgaggcgcgttctctttgtttattcatcaaatcttgtccactgtaattttgaggaaaaa-tattgttactattcaatagttttactcaatattttctttattccttcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|569184|gb|D40033.1|D40033
EST:     CTAGGTGCTGGTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGG                         CTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGA
genomic: CTAGGTGCTGGTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGGgtaagttttt ... tattttgcagCTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGA
EST: gi|29624053|gb|CB629064.1|CB629064
EST:     GTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGG                         CTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGA
genomic: GTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGGgtaagttttt ... tattttgcagCTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGA