1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATCACGCTACAGGGAGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatctctagcctatgtctattgccacctttttggaccatgtagcaaatctaaaatccaaatttcatcttgttatgttgggaatag
species | Oryza sativa |
transcript | LOC_Os11g01439.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGATTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|58695568|gb|CK084255.1|CK084255
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGATTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|29646000|gb|CB651007.1|CB651007
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|86881810|gb|CI324099.1|CI324099
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: GACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGGCGAAGAAGTATATGAAGAGGGTTGCEST: gi|86832395|gb|CI315130.1|CI315130
genomic: GACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCT-GGCGAAGAAGTATATGAAGAGGGTTGC
EST: TACGCACTACC-GTGGATTGGCTGTCT-GTTCCGGGGTAG-TGGCAAG ATCAAATT-GCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|29612706|gb|CB617719.1|CB617719
genomic: TACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGATTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|27547352|gb|CA765429.2|CA765429
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: GTACGGACTACCGGTGGATTGGCTGTCTGATTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|29612723|gb|CB617736.1|CB617736
genomic: GTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGATTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|86597114|gb|CI272709.1|CI272709
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|29613986|gb|CB618999.1|CB618999
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGATTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|18387726|gb|BM420924.1|BM420924
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGATTCCGGGGTAGTTGGCAAG ATCNAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|29668095|gb|CB664370.1|CB664370
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|29632488|gb|CB637497.1|CB637497
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|58609462|gb|CK037495.1|CK037495
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGATTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|86866410|gb|CI343399.1|CI343399
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGT-GATTGGCTGTCT-GTTCCGGGGTAGTTGGCAAG ATCAAATTGG-ATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|29629417|gb|CB634426.1|CB634426
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGATTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|86864001|gb|CI332927.1|CI332927
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: GGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCCEST: gi|86893099|gb|CI333401.1|CI333401
genomic: GGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
EST: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAG ATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
genomic: AGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatct ... ttgggaatagATCAAATTGGCATCTGTTCAGCTGGCGAAGAAGTATATGAAGAGGGTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATCACGCTACAGGGAGTACGGACTACCGGTGGATTGGCTGTCTGGTTCCGGGGTAGTTGGCAAGgttaacatctctagcctatgtctattgccacctttttggaccatgtagcaaatctaaaatccaaatttcatcttgttatgttgggaatag
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