1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGgtacatactgcatatcgtgcatgattaaaaaaaaaagcaaaatcagattggcatttttgattatgttaatattgtgaccaagccaatggtaacatctttg...
species | Oryza sativa |
transcript | LOC_Os11g01420.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTG CGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGEST: gi|88503749|gb|CI431255.1|CI431255
genomic: TAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGgtacatactg ... tgtattgcagCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGG
EST: TAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTG CGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGEST: gi|27548175|gb|CA767467.2|CA767467
genomic: TAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGgtacatactg ... tgtattgcagCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGG
EST: TAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTG CGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGEST: gi|55440810|gb|CV733717.1|CV733717
genomic: TAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGgtacatactg ... tgtattgcagCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGG
EST: TAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTTTG CGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGEST: gi|86525962|gb|CI166168.1|CI166168
genomic: TAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGgtacatactg ... tgtattgcagCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGG
EST: ACCAGAAGCAGCACAAACTCTG CGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGEST: gi|88459689|gb|CI521949.1|CI521949
genomic: ACCAGAAGCAGCACAAACTCTGgtacatactg ... tgtattgcagCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGG
EST: TTTCACCAGAAGCAGCACAAACTCTG CGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGEST: gi|86526028|gb|CI166234.1|CI166234
genomic: TTTCACCAGAAGCAGCACAAACTCTGgtacatactg ... tgtattgcagCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGG
EST: TAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTG CGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGEST: gi|88662749|gb|CI473698.1|CI473698
genomic: TAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGgtacatactg ... tgtattgcagCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGG
EST: AGTAATNTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTN CGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGEST: gi|66915344|gb|CX102192.1|CX102192
genomic: AGT-ATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGgtacatactg ... tgtattgcagCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGG
EST: TAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTG CGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGG
genomic: TAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGgtacatactg ... tgtattgcagCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGgtacatactgcatatcgtgcatgattaaaaaaaaaagcaaaatcagattggcatttttgattatgttaatattgtgaccaagccaatggtaacatctttg
- - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa