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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAAAAAGCTCAGTGAAAGTATTAAGGACATTGATGGTGCAAGGATGGAAGATAACAAATTCTGTGTGTCCGTTCATTACCGCAATGTAGCACCACATgtaagcctgcattgaagattttaatttcacacaggaaatatgtggtgtaaaatgtttgctgaatattattctcattgttacatcttag

Basic information

species Oryza sativa
transcript LOC_Os10g40550.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g40555.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G178546_T01 (Zea mays), 5'ss of exon 7
GTACAAAAAGCTCAGTGAAAGTATTAAGGACATTGATGGTGCAAGGATGGAAGATAACAAATTCTGTGTGTCCGTTCATTACCGCAATGTAGCACCACATgtaag---cctgcattgaagatttta-atttcacacaggaaatatgtggtgtaaa-atgtttgctgaatatt-----------------attctcattgttacatcttag
|||  |||| ||  |||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||| ||||| ||   | ||||||     ||  ||   ||  |||| |||||| |||  |||| ||   ||  |  || |  |||||||||                  ||||  | | || ||||| ||
GTATGAAAAACTTGGTGAGAGTGTTAAGGACATTGATGGTGCAAGGATGGAAGACAACAAGTTCTGTGTATCTGTGCATTACCGTAATGTGGCGGAAGATgtaatagttctatatcttagtgtttatatttcatacaaaaaatgtgcattgggattatttgagctgaatatggacccatttaaactcagattcctactcttgcatctcag

upper sequence: LOC_Os10g40555.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA04G13880.1 (Glycine max), 5'ss of exon 7
GTACAAAAAGCTCAGTGAAAGTATTAAGGACATTGATGGTGCAAGGATGGAAGATAACAAATTCTGTGTGTCCGTTCATTACCGCAATGTAGCACCACATgtaa-gcctgcattgaagattttaatttcacacaggaaatatgtg-gtgtaaaatgtttgctgaatattatt--ctcattgttacatcttag---------
         |||||  ||  | |   | || ||||| || ||||   | ||  | |||||||| |||||||| || ||||||||||||||||      | |||    || | ||   |||  |      | | ||| | | | |     |||||||  | |    | |||    || ||| | | || |||          
ACTTGGGTTGCTCATGGAGTGCACAGAAGATATTGAAGGAGCAACAGTTGAGAACAACAAATTTTGTGTGTCTGTGCATTACCGCAATGTAGATGAGGAGgtattaacttcttttctgatgcttgcacaaaatagggagtttttctacataaaatgactccctctttttaccaacttatt-tcatattttaccctaaacta

upper sequence: LOC_Os10g40555.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA06G47630.2 (Glycine max), 5'ss of exon 6
GTACAAAAAGCTCAGTGAAAGTATTAAGGACATTGATGGTGCAAGGATGGAAGATAACAAATTCTGTGTGTCCGTTCATTACCGCAATGTAGC--ACCACATgtaagcctgcatt--gaagatt-ttaatttc--acacaggaaatatgtggtgtaaaatgtttgctgaatat-tattctcattgttacatcttag----
         |||||  ||  |||| || || || || || ||||   | ||  | |||||||| |||||||| || ||||||||||||||||   |  |  | | | | |   ||  || | || ||||| |    || | |||    | | | |      |  | ||| |   | || | |       || | |     
ACGTGGGTTGCTCAAGGAGTGTATAAAAGATATAGAAGGAGCAACAGTTGAGAACAACAAATTTTGTGTGTCTGTGCATTACCGCAATGTAGATGAGGAGgtattaacttcttttctgatgcttattaatctttagcataagaatagggagtttttctgcataagatgacttcctctttttaccaacttatttcatattt

upper sequence: LOC_Os10g40555.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA06G47630.1 (Glycine max), 5'ss of exon 7
GTACAAAAAGCTCAGTGAAAGTATTAAGGACATTGATGGTGCAAGGATGGAAGATAACAAATTCTGTGTGTCCGTTCATTACCGCAATGTAGC--ACCACATgtaagcctgcatt--gaagatt-ttaatttc--acacaggaaatatgtggtgtaaaatgtttgctgaatat-tattctcattgttacatcttag----
                             | || || || ||||   | ||  | |||||||| |||||||| || ||||||||||||||||   |  |  | | | | |   ||  || | || ||||| |    || | |||    | | | |      |  | ||| |   | || | |       || | |     
-----------------------------ATATAGAAGGAGCAACAGTTGAGAACAACAAATTTTGTGTGTCTGTGCATTACCGCAATGTAGATGAGGAGgtattaacttcttttctgatgcttattaatctttagcataagaatagggagtttttctgcataagatgacttcctctttttaccaacttatttcatattt