1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACTTTCTCCCATGGGAGAGGCCTGTTCCAGGATGGACCTTACTGCCATCCATCAGATCCTAGTTTCAACACATTACAGAGATGATGAAGGGACTAATGAGgtaaagacaatatagagcactgtggctccactcttttctagctggttgggatactggtccctctcgactgttttcttcctatggggacgtgtctaaattgttctcctctctgcag
species | Oryza sativa |
transcript | LOC_Os10g39670.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCAGATCCTAGTTTCGACACATTACAGAGATGATGAAGGGACTAATGAG CTATCTTTCCAAGAATGGACTCAACAGATGAGAGATATGTTGGACGCTAGGEST: gi|58656973|gb|CK045653.1|CK045653
genomic: ATCAGATCCTAGTTTCAACACATTACAGAGATGATGAAGGGACTAATGAGgtaaagacaa ... ctctctgcagCTATCTTTCCAAGAATGGACTCAACAGATGAGAGATATGTTGGATGCTAGG
EST: ATCAGATCCTAGTTTCAACACATTACAGAGATGATGAAGGGACTAATGAG CTATCTTTCCAAGAATGGACTCAACAGATGAGAGATATGEST: gi|569871|gb|D40720.1|D40720
genomic: ATCAGATCCTAGTTTCAACACATTACAGAGATGATGAAGGGACTAATGAGgtaaagacaa ... ctctctgcagCTATCTTTCCAAGAATGGACTCAACAGATGAGAGATATG
EST: ATCAGATCCTAGTTTCAACACATTACAGAGATGATGAAGGGACTAATGAG CTATCTTTTCAAGAATGGACTCAACAGATGAGAGATATGTTGGATGCTAGGEST: gi|58595248|gb|CF993556.1|CF993556
genomic: ATCAGATCCTAGTTTCAACACATTACAGAGATGATGAAGGGACTAATGAGgtaaagacaa ... ctctctgcagCTATCTTTCCAAGAATGGACTCAACAGATGAGAGATATGTTGGATGCTAGG
EST: ATCAGATCCTAGTTTCAACACATTACAGAGATGATGAAGGGACTAATGAG CTATCTTTCCAEST: gi|29663195|gb|CB659470.1|CB659470
genomic: ATCAGATCCTAGTTTCAACACATTACAGAGATGATGAAGGGACTAATGAGgtaaagacaa ... ctctctgcagCTATCTTTCCA
EST: ATCAGATCCTAGTTTCAACACATTACAGAGATGATGAAGGGACTAATGAG CTATCTTTCCAAGAATGGACTCAACAGATGAGAGATATGTTGGATGCTAGGEST: gi|66918229|gb|CX105077.1|CX105077
genomic: ATCAGATCCTAGTTTCAACACATTACAGAGATGATGAAGGGACTAATGAGgtaaagacaa ... ctctctgcagCTATCTTTCCAAGAATGGACTCAACAGATGAGAGATATGTTGGATGCTAGG
EST: GTTTCAACACATTACAGAGATGATGAAGGGACTAATGAG CTATCTTTCCAAGAATGGACTCCACAGATGAGAGATATGTTGGATGCTAGG
genomic: GTTTCAACACATTACAGAGATGATGAAGGGACTAATGAGgtaaagacaa ... ctctctgcagCTATCTTTCCAAGAATGGACTCAACAGATGAGAGATATGTTGGATGCTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTTCTCCCATGGGAGAGGCCTGTTCCAGGATGGACCTTACTGCCATCCATCAGATCCTAGTTTCAACACATTACAGAGATGATGAAGGGACTAATGAGgtaaagacaatatagagcactgtggctccactcttttctagctggttgggatactggtccctctcgactgttttcttcctatggggacgtgtctaaattgttctcctctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG