1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatttacctttttgttggcaatacaatatatatctcattttattctttcatgtttctattagaatcattactctctttttacatcactataactctatccttatgccaacaaactgaaaagacgcttgttatggcag
species | Oryza sativa |
transcript | LOC_Os10g38980.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGGTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGEST: gi|116875026|gb|EC365534.1|EC365534
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGEST: gi|116875033|gb|EC365541.1|EC365541
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGEST: gi|88522247|gb|CI449992.1|CI449992
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGEST: gi|88554422|gb|CI484602.1|CI484602
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATGGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGEST: gi|88483086|gb|CI420357.1|CI420357
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGEST: gi|29640850|gb|CB645857.1|CB645857
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGEST: gi|88526257|gb|CI453313.1|CI453313
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGGTCAG TAGGTATCTCCAGGACTGGAATTGGAATTTTGGCGCCTCTTGTATTCTTTGEST: gi|88552657|gb|CI482685.1|CI482685
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTGTATTCTTTEST: gi|86504223|gb|CI146856.1|CI146856
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAA-GCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTT
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGEST: gi|88522672|gb|CI449489.1|CI449489
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGGATTTTGGCGCCTCTTCTATTCTTTGEST: gi|86500464|gb|CI143097.1|CI143097
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG --G-TATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGEST: gi|88555795|gb|CI486077.1|CI486077
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTCCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGGAATTTTGGCNCCTCTTGTATTCTTTEST: gi|88283178|gb|CI404624.1|CI404624
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATT-GGAATTTTGGCGCCTCTTCTATTCTTT
EST: AGAAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGEST: gi|88537263|gb|CI465088.1|CI465088
genomic: AGAAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTTTATTCTTTGEST: gi|29666973|gb|CB663248.1|CB663248
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG --G-TATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGEST: gi|88546745|gb|CI474415.1|CI474415
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATGGCCTGCATTGCCTGTCGGGCCAACATTTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTGTTCTATTCTTTGEST: gi|88482069|gb|CI419340.1|CI419340
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: TCATTGCCTGCATTCCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTGTATTCTTTGEST: gi|86861783|gb|CI329548.1|CI329548
genomic: TCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGEST: gi|88555527|gb|CI485792.1|CI485792
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
EST: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAG TAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
genomic: AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatt ... gttatggcagTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGTCATTGCCTGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGgtacttaatttacctttttgttggcaatacaatatatatctcattttattctttcatgtttctattagaatcattactctctttttacatcactataactctatccttatgccaacaaactgaaaagacgcttgttatggcag
- - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - AGCTCA