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TTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTGgtaagtaatacctccctttggtgataggaattaagaatgatctgagataggttgaaaggataaagttgccagcaattccagatacacacatacaaaaaaa...
species | Oryza sativa |
transcript | LOC_Os10g36760.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTG GAAACATTTGCTCGCTATGTGAAAGATTATTACATAGGAACATTTGGAGCAEST: gi|33796295|gb|CF324015.1|CF324015
genomic: CTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTGgtaagtaata ... tgctgtgcagGAAACATTTGCTCGCTATGTGAAAGATTATTACATAGGAACATTTGGAGCA
EST: CTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTG GAAACATTTGCTCGCTATGTGAAAGATTATTACATAGGAACATTTGGAGCAEST: gi|33801565|gb|CF326654.1|CF326654
genomic: CTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTGgtaagtaata ... tgctgtgcagGAAACATTTGCTCGCTATGTGAAAGATTATTACATAGGAACATTTGGAGCA
EST: CTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTG GAAACATTTGCTCGCTATGTGAAAGATTATTACATATTGAACATTTGGAGCEST: gi|163918133|gb|EG713999.1|EG713999
genomic: CTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTGgtaagtaata ... tgctgtgcagGAAACATTTGCTCGCTATGTGAAAGATTATTACATA-GGAACATTTGGAGC
EST: CTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTG GAAACATTTGCTCGCTATGTGAAAGATTATTACATAGGAACATTTGGAGCAEST: gi|33796974|gb|CF324350.1|CF324350
genomic: CTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTGgtaagtaata ... tgctgtgcagGAAACATTTGCTCGCTATGTGAAAGATTATTACATAGGAACATTTGGAGCA
EST: CTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTG GAAACATTTGCTCGCTATGTGAAAGATTATTACATAGGAACATTTGGAGCA
genomic: CTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTGgtaagtaata ... tgctgtgcagGAAACATTTGCTCGCTATGTGAAAGATTATTACATAGGAACATTTGGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTGgtaagtaatacctccctttggtgataggaattaagaatgatctgagataggttgaaaggataaagttgccagcaattccagatacacacatacaaaaaaa
- - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaaa