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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTCCGTTTGCGTGATATCAATGAGTACGCTGAGTGGTATGGTCATGCACATAGGGCACCAGAACTTCAGgttttcctggctacctgtccctacatacttgtttagttattggtgttggttatgcacttctactatttataagatctttagttctcagcgttgtttatgagcatttgcttttagtaagatcttaagttatgtatcattaaattatgtttgtttatgaactcatactctgtggcttgcttctctgtttattcag

Basic information

species Oryza sativa
transcript LOC_Os10g35170.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g35170.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G038848_T01 (Zea mays), 5'ss of exon 7
------------------------GATTTCCGTTTGCGTGATATCAATGAGTACGCTGAGTGGTATGGTCATGCACATAGGGCACCAGAACTTCAGgttttcctggctacctgtccctacatacttgtttagttattggtgttggttatgcacttctactatttataagatctttagttctcagcgttgttta-tgagcatttgcttttagtaagatcttaagttatgtatcattaaattatgtttgtttatgaactcatactctgtggcttgcttctctgtttattcag
                        || |||||  | || || ||||||||||| |||||||||||||| ||| | || |||||||| |||||||||||||       |||   ||||| |||     || |     | | |    ||| | |||  ||  |  |  || || || |  | | | | |   |||   |  ||||   | |                                                                                 
TTGTTGAAAAACTATTGCTTACAGGACTTCCGACTACGCGACATCAATGAGTATGCTGAGTGGTATGGACATTCCCACAGGGCACCGGAACTTCAGgtttc-----gtactactccctccat-----ttcaaaatgtagggcatattagg-act--taaaaagtcaaacattttaaaatttgaccatcaattagccaaaatttctgtat---------------------------------------------------------------------------------

upper sequence: LOC_Os10g35170.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G038848_T02 (Zea mays), 5'ss of exon 7
GATTTCCGTTTGCGTGATATCAATGAGTACGCTGAGTGGTATGGTCATGCACATAGGGCACCAGAACTTCAGgttttcctggctacctgtccctacatacttgtttagttattggtgttggttatgcacttctactatttataagatctttagttctcagcgttgttta-tgagcatttgcttttagtaagatcttaagttatgtatcattaaattatgtttgtttatgaactcatactctgtggcttgcttctctgtttattcag
|| |||||  | || || ||||||||||| |||||||||||||| ||| | || |||||||| |||||||||||||       |||   ||||| |||     || |     | | |    ||| | |||  ||  |  |  || || || |  | | | | |   |||   |  ||||   | |                                                                                 
GACTTCCGACTACGCGACATCAATGAGTATGCTGAGTGGTATGGACATTCCCACAGGGCACCGGAACTTCAGgtttc-----gtactactccctccat-----ttcaaaatgtagggcatattagg-act--taaaaagtcaaacattttaaaatttgaccatcaattagccaaaatttctgtat---------------------------------------------------------------------------------