1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGAGTGGACTACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAGgtgatcactcttggtgctactacctgtctgaactttctgaagccgtcgatactgaatgtctgaaaaatgactcgtgaatttctctgacaagtagtccaatggtag
species | Oryza sativa |
transcript | LOC_Os10g35070.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAG GTACCCGGAGATGAGCAAGGCTCTGATGATGGCCGGCCGGCCGATCTACTTEST: gi|58588710|gb|CF987018.1|CF987018
genomic: TACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAGgtgatcactc ... ccaatggtagGTACCCGGAGATGAGCAAGGCTCTGATGATGGCCGGCCGGCCGATCTACTT
EST: TACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAG GTACCCGGAGATGAGCAAGGCTCTGATGATTGCCGGCCGGCCGATCTACTTEST: gi|218491995|gb|FG964383.1|FG964383
genomic: TACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAGgtgatcactc ... ccaatggtagGTACCCGGAGATGAGCAAGGCTCTGATGATGGCCGGCCGGCCGATCTACTT
EST: TACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAG GTACCCGGAGATGAGCAAGGCTCTGATGATGGCCGGCCGGCCGATCTACTTEST: gi|112785532|gb|EE590887.1|EE590887
genomic: TACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAGgtgatcactc ... ccaatggtagGTACCCGGAGATGAGCAAGGCTCTGATGATGGCCGGCCGGCCGATCTACTT
EST: TACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAG GTACCCGGAGATGAGCAAGGCTCTGATGATGGCCGGCCGGCCGATCTACTT
genomic: TACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAGgtgatcactc ... ccaatggtagGTACCCGGAGATGAGCAAGGCTCTGATGATGGCCGGCCGGCCGATCTACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTGGACTACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAGgtgatcactcttggtgctactacctgtctgaactttctgaagccgtcgatactgaatgtctgaaaaatgactcgtgaatttctctgacaagtagtccaatggtag
- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA