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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCCCAAAAGGACTGCTGAATTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAGTGATTgtatgctctaactcttgggactacttctgttagaaaattctgggcatctttaacttatctactgacatatttcttatgcag

Basic information

species Oryza sativa
transcript LOC_Os10g32730.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g32730.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 8
GTCCCCAAAAGGACTGCTGAATTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAGTGATTgtatgctctaactcttgggact------acttctgtt----------agaaaattctgggcatctttaacttatctactgacatatttcttatgcag
 | ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || | ||||||||| ||||| ||||||||||||| |||||||||| || || ||||| |  |      |||| ||||          |||| ||| || |  | || | |||||||   || | || |  | |||||
ATACCCAAAAAGACTGCTGAGTTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGATGTGAGGCCTGAAAAGTGGGGGTTGCCACCATTTAATGATTgtatgttcaaagtcttgagcttctctatacttttgttcattgagaagagaacattatgtgggttttaagcttatctgtcgataaatgtgctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29671819|gb|CB668094.1|CB668094
EST:     CCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAGTGATT                         GGATCGATGATACCTTACCAATAGAACCATGGTTTATTGGTGGACCTGTGA
genomic: CCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAGTGATTgtatgctcta ... tcttatgcagGGATCGATGATACCTTACCAATAGAACCATGGTTTATTGGTGGACCTGTGA
EST: gi|29629324|gb|CB634335.1|CB634335
EST:     CCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAGTGATT                         GGATTGATGATACCTTACCAATAGAACCATGGTTTATTGGTGGACCTGTGA
genomic: CCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAGTGATTgtatgctcta ... tcttatgcagGGATCGATGATACCTTACCAATAGAACCATGGTTTATTGGTGGACCTGTGA
EST: gi|29684882|gb|CB681157.1|CB681157
EST:     CCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAATGATT                         GGATCGATGATACCTTACCAATAGAACCATGGTTTATTGGTGGACCTGTGA
genomic: CCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAGTGATTgtatgctcta ... tcttatgcagGGATCGATGATACCTTACCAATAGAACCATGGTTTATTGGTGGACCTGTGA
EST: gi|29623338|gb|CB628349.1|CB628349
EST:     CCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAGTGATT                         GGATTGATGATACCTTACCAATAGAACCATGGTTTATTGGTGGACCTGTGA
genomic: CCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAGTGATTgtatgctcta ... tcttatgcagGGATCGATGATACCTTACCAATAGAACCATGGTTTATTGGTGGACCTGTGA
EST: gi|33680484|gb|CF308723.1|CF308723
EST:     CCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAGTGATT                         GGATCGATGATACCTTACCAATAGAACCATGGTTTATTGGTGGACCTGTGA
genomic: CCTCCTTGACGTAAAGCCTGAAAAATGGGGATTGCCACCATTTAGTGATTgtatgctcta ... tcttatgcagGGATCGATGATACCTTACCAATAGAACCATGGTTTATTGGTGGACCTGTGA