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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGGACTCTCTATGGAGAAGGTTGGAGCTTTCTCATTCCTGACCTCGTCTGTGATGTTGAGAACGGGCTCTTATGGAAACTTCATTTAGACCTAGAGgtaagagattgctaatggacaattccttgatgccttagtttataattttttgccctgacatgcataactggaattttag

Basic information

species Oryza sativa
transcript LOC_Os10g26145.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g26140.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G444692_T03 (Zea mays), 5'ss of exon 3
TGGTGGGACTCTCTATGGAGAAGGTTGGAGCTTTCTCATTCCTGACCTCGTCTGTGATGTTGAGAACGGGCTCTTATGGAAACTTCATTTAGACCTAGAGgtaagagattgctaatggacaattccttg------atgcct------tagtttataattttttgccctgacatgcataactggaattttag
 ||||| ||  |||||||||||||||||| ||| |||||||| |||||| ||||||||| |||||| |||||||||||||| || |||||||| || | |||||||  |||||||||| |||||  ||       |  |||      | ||  ||   ||||||| || |||||| || || |||||  ||
CGGTGGAACCATCTATGGAGAAGGTTGGAACTTCCTCATTCCAGACCTCATCTGTGATGCTGAGAATGGGCTCTTATGGAAGCTCCATTTAGATCTGGCGgtaagaagttgctaatggtcaattttttttgtgtcacacctctttcattgtgaatgcatttttgctctaacatgcttatcttgaattacag