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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTGATGATACCTTACCAATAGAACCATGGTTTATAGGTGGATCTGTGATTAAAGGATTCGGCCGTGGTTCTAAAGTACTAGGAATTCCAACAGgtatggtggagcatataactagagagtagtttataagctctatggcttttgtggttttacattctatgaatcacaagaatgatttttctcatgtagtgtg...

Basic information

species Oryza sativa
transcript LOC_Os10g14814.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g14814.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 9
GGATTGATGATACCTTACCAATAGAACCATGGTTTATAGGTGGATCTGTGATTAAAGGATTCGGCCGTGGTTCTAAAGTACTAGGAATTCCAACAGgtatggtggagcatataactagagagtagtttataagctctatggcttttgtggttttacattctatgaatcacaagaatgatttttctcatgtagtgtg-
||||||| | ||||||||||||||||||||||||||| |||||  ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||       | |    ||||   ||  |   ||    | ||  ||      | |    || |   ||   |  |  ||  || | |  |  |      
GGATTGAAGGTACCTTACCAATAGAACCATGGTTTATTGGTGGGCCTGTGATCAAAGGATTTGGCCGTGGTTCTAAAGTACTAGGAATACCAACAGgtatgacttgctagaagcatagaagctaaatgtcaaaagatttg-tttaaaatatctcctttttttgaaagtgccggtctggattatttagtcaacctctt

upper sequence: LOC_Os10g14814.1 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv00s0181g00140.t01 (Vitis vinifera), 5'ss of exon 8
GGATTGATGATACCTTACCAATAGAACCATGGTTTATAGGTGGATCTGTGATTAAAGGATTCGGCCGTGGTTCTAAAGTACTAGGAATTCCAACAGgtatggtggagcatataactagagagtagtttataagctctatggcttttgtggtttt--acattctatgaatcacaagaatgatttttctcatgtagtgtg
|| | || |||||||||||| |||| || |||| |||||||||  |||| ||||| ||||| || ||||| || || ||||| ||| | |||||||||  |        | | |||       |     |   ||  ||    |   |   | |  |||||   |  | |    || ||   ||  |  || | ||  
GGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCATTAAGGGATTTGGTCGTGGGTCAAAGGTACTTGGAGTCCCAACAGgttcgtgattttctctgactttctccaatacctttgcctagataagctaaattcctatggacatttctttgacctttgga-tgtgcttggtgttgaattgc-

upper sequence: LOC_Os10g14814.1 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv00s0181g00130.t01 (Vitis vinifera), 5'ss of exon 7
GGATTGATGATACCTTACCAATAGAACCATGGTTTATAGGTGGATCTGTGATTAAAGGATTCGGCCGTGGTTCTAAAGTACTAGGAATTCCAACAGgtatggtggagcatataactagagagtagtttataagctctatggcttttgtggtttt--acattctatgaatcacaagaatgatttttctcatgtagtgtg
|| | || |||||||||||| |||| || |||| |||||||||  |||| ||||| ||||| || ||||| || || ||||| ||| | |||||||||  |        ||| |||       |     |  |||  ||    |   |   | |  |||||   |  | |    || ||   ||  |  || | ||  
GGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCATTAAGGGATTTGGTCGTGGGTCAAAGGTACTTGGAGTCCCAACAGgttcgtgattttctatgactttctccaatacctttggctagataagctaaattcctatggacatttctttgacctttgga-tgtgcttgatgttgaattgc-