1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TTACACAATAGCATTGAGAAGCTGTAGCTTGACTGGTGATTTAGGATTTGCTCTGAAGATCTATGAAGATATGAACAAGATTGGAGTACAACCTGATGAGgtgttatttctagagagaacattaaagggatatgtgcttaacccacatgacttatttaactgttatgtttgtttgattccatccactacag
species | Oryza sativa |
transcript | LOC_Os10g10170.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTCTGAAGATCTATGAAGATATGAACAAGATTGGAGTACAACCTGATGAG ATGTTTCTGAGTGCTCTAGTTGATGTTGCTGGCCATGCTAGGAGGGCTGATEST: gi|58695106|gb|CK083793.1|CK083793
genomic: CTCTGAAGATCTATGAAGATATGAACAAGATTGGAGTACAACCTGATGAGgtgttatttc ... tccactacagATGTTTCTGAGTGCTCTAGTTGATGTTGCTGGCCATGCTAGGAGGGCTGAT
EST: CTCTGAAGATCTATGAAGATATGAACAAGATTGGAGTACAACCTGATGAG ATGTTTCTGAGTGCTCTAGTTGATGTTGCTGGCCATGCTAGGAGGGCTGATEST: gi|29671044|gb|CB667319.1|CB667319
genomic: CTCTGAAGATCTATGAAGATATGAACAAGATTGGAGTACAACCTGATGAGgtgttatttc ... tccactacagATGTTTCTGAGTGCTCTAGTTGATGTTGCTGGCCATGCTAGGAGGGCTGAT
EST: CTCTGAAGATCTATGAAGATATGAACAAGATTGGAGTACAACCTGATGAG ATGTTTCTGAGTGCTCTAGNTGATGTTGCTGG
genomic: CTCTGAAGATCTATGAAGATATGAACAAGATTGGAGTACAACCTGATGAGgtgttatttc ... tccactacagATGTTTCTGAGTGCTCTAGTTGATGTTGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACACAATAGCATTGAGAAGCTGTAGCTTGACTGGTGATTTAGGATTTGCTCTGAAGATCTATGAAGATATGAACAAGATTGGAGTACAACCTGATGAGgtgttatttctagagagaacattaaagggatatgtgcttaacccacatgacttatttaactgttatgtttgtttgattccatccactacag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG