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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatctgaactaagattttctcattctatgtgttgctcataaagttatttaatgatgtgctctatattgcag

Basic information

species Oryza sativa
transcript LOC_Os10g08550.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g08550.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G048371_T03 (Zea mays), 5'ss of exon 7
CATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatctgaactaagattt--tctcattctatgtgttgctcataaagttatttaatgatgtgctctatat---tgcag
|||||||||||| ||||| ||||||||  | || ||||| || ||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||| |   || ||| |||||||    |  ||   ||| |   |  |   |   | |  | |||  || |  ||   |||||
CATTGCCAACCTAGCTGGGAACAAGCAGTTAGTGTTGCCTGTCCCTGCATTCAATGTCATCAACGGTGGTTCCCATGCTGGAAACAAGCTTGCTATGCAGgcaataccctcaaccaagatttaacattctttcttgtttgagttttttcgcattatgtttatgctctttccatggatgcag

upper sequence: LOC_Os10g08550.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA09G28100.1 (Glycine max), 5'ss of exon 7
CATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtg---atctgaactaagattttctcattctatgtgttgctcataaagttat----ttaatgatgtgctctatattgcag
||||||||| || ||||||||||||    ||||  |||| |||||| ||||||| || || || || || |||||||||||||| ||||| || ||||||| | ||   || | |  ||| | ||   ||    |  | ||  |   ||| ||       | |   || |  ||    || ||
CATTGCCAATCTGGCTGGAAACAAGACTTTGGTACTGCCTGTACCTTCATTCAATGTTATCAATGGAGGCTCACATGCTGGAAATAAGCTAGCAATGCAGgtaatgtctatttaatataacaattgaacaggacaattctttattgaaaatttgaaatgcttaccctgggtcctcctctgtag

upper sequence: LOC_Os10g08550.3 (Oryza sativa), 5'ss of exon 7
lower sequence: PP1S1_527V6.1 (Physcomitrella patens), 5'ss of exon 7
CATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatctgaactaagattttc--tcattctatgtgttgctcataaagttatttaatgatgtgctctatattgcag----------------------
|||||||||||| ||||| |||||| || | ||  |||| || ||||| |||||||| || || |||||||| |||||||| |||||||| ||||||||||       ||     |   |   |  | | | |   |  | ||  |  | ||||    |     |   |  | ||  |                      
CATTGCCAACCTGGCTGGCAACAAGGAAATTGTGATGCCAGTGCCTGCCTTCAACGTGATCAATGGTGGATCTCATGCTGGCAACAAGCTCGCCATGCAGgtccgctccttcctgatcgtcgacaattagtatccctcctacttgtctaattatcaggtatctgggggtgcaatggggacgtaatgtgtttggacgagga

upper sequence: LOC_Os10g08550.3 (Oryza sativa), 5'ss of exon 7
lower sequence: PP1S1_526V6.1 (Physcomitrella patens), 5'ss of exon 7
CATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcag---tgatctgaa--ctaagattttctcattc--tatgtgttgctca--taaagttatttaatgatgtgctctatattgcag---------------
|||||||||||| ||||| |||||| || | ||  |||| || || || |||||||| || ||||||||||| |||||||| |||||||| ||||||||||      |  ||  ||  || ||  | |  ||| |  |||    |||  |  || |   ||  ||||||  |    |  ||  ||               
CATTGCCAACCTGGCTGGCAACAAGGAAATCGTGATGCCAGTGCCCGCTTTCAACGTGATCAACGGTGGATCTCATGCTGGCAACAAGCTCGCCATGCAGgtctgcttcttcccaattctcagcatctagcatccgttattgactgcgtagttacaaaaatgcaatgatccgtgaaagtttcgagcaagtgttatgtaca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|428372|gb|D24520.1|D24520
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGC
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGC
EST: gi|58675782|gb|CK064469.1|CK064469
EST:     CACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: CACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|117224917|gb|CT845976.1|CT845976
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29688336|gb|CB684611.1|CB684611
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58687518|gb|CK076205.1|CK076205
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58604220|gb|CK014748.1|CK014748
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCT
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCT
EST: gi|33676058|gb|CF304297.1|CF304297
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|33675547|gb|CF303786.1|CF303786
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTNGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29656140|gb|CB652415.1|CB652415
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29678862|gb|CB675137.1|CB675137
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58597291|gb|CK007819.1|CK007819
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58687904|gb|CK076591.1|CK076591
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATT
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATT
EST: gi|33674962|gb|CF303201.1|CF303201
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|427989|gb|D24135.1|D24135
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29644081|gb|CB649088.1|CB649088
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29665470|gb|CB661745.1|CB661745
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29679887|gb|CB676162.1|CB676162
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|53553401|gb|CO436313.1|CO436313
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|396941266|gb|HO188475.1|HO188475
EST:     TGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58695790|gb|CK084477.1|CK084477
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCAT
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCAT
EST: gi|428358|gb|D24506.1|D24506
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58679935|gb|CK068622.1|CK068622
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGG
EST: gi|23513780|gb|BU673306.1|BU673306
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29619828|gb|CB624840.1|CB624840
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29657924|gb|CB654199.1|CB654199
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58684785|gb|CK073472.1|CK073472
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCC
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCC
EST: gi|29668022|gb|CB664297.1|CB664297
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58588647|gb|CF986955.1|CF986955
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58606067|gb|CK034100.1|CK034100
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAGACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58662698|gb|CK051384.1|CK051384
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|33676198|gb|CF304437.1|CF304437
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|33658241|gb|CF280855.1|CF280855
EST:     CAACGTCATTAACGGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCA
genomic: CAACGTCATTAACGG-TGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCA
EST: gi|30228895|gb|CB966786.1|CB966786
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29668592|gb|CB664867.1|CB664867
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58677316|gb|CK066003.1|CK066003
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATT
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATT
EST: gi|29681677|gb|CB677952.1|CB677952
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|163920149|gb|EG712055.1|EG712055
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58686932|gb|CK075619.1|CK075619
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGG
EST: gi|58694276|gb|CK082963.1|CK082963
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|30229421|gb|CB967312.1|CB967312
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58671253|gb|CK059939.1|CK059939
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTC
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTC
EST: gi|58673278|gb|CK061964.1|CK061964
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58683046|gb|CK071733.1|CK071733
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|33676308|gb|CF304547.1|CF304547
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|325494282|gb|JG458806.1|JG458806
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGG
EST: gi|58681144|gb|CK069831.1|CK069831
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29659230|gb|CB655505.1|CB655505
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|14192326|gb|AU184537.1|AU184537
EST:     TTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58678619|gb|CK067306.1|CK067306
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGACATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGATTCATTCAAGGAGGCCATG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATG
EST: gi|29682743|gb|CB679018.1|CB679018
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58693505|gb|CK082192.1|CK082192
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29677116|gb|CB673391.1|CB673391
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29679137|gb|CB675412.1|CB675412
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAAGAGGCCATGAAC
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|27554031|gb|CA997931.1|CA997931
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58658241|gb|CK046921.1|CK046921
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCA
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCA
EST: gi|33678253|gb|CF306492.1|CF306492
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACT
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACT
EST: gi|29668244|gb|CB664519.1|CB664519
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58673545|gb|CK062231.1|CK062231
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATC
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATC
EST: gi|58603616|gb|CK014144.1|CK014144
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29678678|gb|CB674953.1|CB674953
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29623734|gb|CB628745.1|CB628745
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|218504551|gb|FG952364.1|FG952364
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|33676730|gb|CF304969.1|CF304969
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29639493|gb|CB644502.1|CB644502
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|218483031|gb|FG953128.1|FG953128
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29629934|gb|CB634943.1|CB634943
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29667979|gb|CB664254.1|CB664254
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|5003018|gb|AU068127.1|AU068127
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|33793332|gb|CF322547.1|CF322547
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGA
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGA
EST: gi|29656696|gb|CB652971.1|CB652971
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58662604|gb|CK051290.1|CK051290
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29664966|gb|CB661241.1|CB661241
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|88361405|gb|CI605186.1|CI605186
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58673211|gb|CK061897.1|CK061897
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAACGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58603025|gb|CK013553.1|CK013553
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACT
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACT
EST: gi|29659075|gb|CB655350.1|CB655350
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58663601|gb|CK052287.1|CK052287
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|29684326|gb|CB680601.1|CB680601
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAG
EST: gi|58686722|gb|CK075409.1|CK075409
EST:     TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAG                         GAGTTCATGATCCTTCCTACTGGGG
genomic: TCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 63 (downstream exon)
Score: 344

CATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatct ... tatattgcagGAGTTCATGATCCTTCCTACTGGGGCCGCTTCATTCAAGGAGGCCATGAAGATGGGTGTTGAAGTGTACCACAACCTGAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGCAGgcagtgatctgaactaagattttctcattctatgtgttgctcataaagttatttaatgatgtgctctatattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT