1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCGAAGCATGGTCTGCTGATAAGGCTGCTGAAGCATTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAGgttagtgcttaataccatggatgattgcaatttctaaaagctggaaagcactatttaccagcttattgtttgtatcaatgcaaaatcatttaattcaacatcatcatctgtatcttgaag
species | Oryza sativa |
transcript | LOC_Os09g39660.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAG GCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGAEST: gi|88593902|gb|CI713856.1|CI713856
genomic: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAGgttagtgctt ... tatcttgaagGCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAG GCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGAEST: gi|88668495|gb|CI722057.1|CI722057
genomic: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAGgttagtgctt ... tatcttgaagGCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAG GCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGAEST: gi|88674647|gb|CI728760.1|CI728760
genomic: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAGgttagtgctt ... tatcttgaagGCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAG GCACGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGAEST: gi|89173145|gb|CI720975.1|CI720975
genomic: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAGgttagtgctt ... tatcttgaagGCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAG GCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGAEST: gi|88673485|gb|CI727598.1|CI727598
genomic: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAGgttagtgctt ... tatcttgaagGCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAG GCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGAEST: gi|88667994|gb|CI722733.1|CI722733
genomic: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAGgttagtgctt ... tatcttgaagGCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAG GCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGAEST: gi|88674685|gb|CI728798.1|CI728798
genomic: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAGgttagtgctt ... tatcttgaagGCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAG GCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGAEST: gi|44671112|gb|CR284546.1|CR284546
genomic: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAGgttagtgctt ... tatcttgaagGCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAG GCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGAEST: gi|88676076|gb|CI730189.1|CI730189
genomic: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAGgttagtgctt ... tatcttgaagGCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAG GCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGA
genomic: TTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAGgttagtgctt ... tatcttgaagGCAAGCTGAACTGATAGAAAGGAAACGGATGAAGAAACTGAGGCAGAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGAAGCATGGTCTGCTGATAAGGCTGCTGAAGCATTAAGATGCCAGAAGTTGCTCGTGGAGGAAGAGGAAGCTGCTCAGAAAAGgttagtgcttaataccatggatgattgcaatttctaaaagctggaaagcactatttaccagcttattgtttgtatcaatgcaaaatcatttaattcaacatcatcatctgtatcttgaag
- - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT