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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCCTGAAAATCCTGATGGTTTACGCCACCTGAGCCAACGAGAGGCTGCACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcacaagcaactaatcttgccattttattccaatccaatttgttgtattgctgaatagtagaaactgtggtttacatttttacattgctgtgcag

Basic information

species Oryza sativa
transcript LOC_Os09g36220.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g36220.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G179024_T01 (Zea mays), 5'ss of exon 7
TGTTCCTGAAAATCCTGATGGTTTACGCCACCTGAGCCAACGAGAGGCTGCACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcacaagcaactaatcttgccattttattccaatccaatttgttgtattgctgaatagtagaaactgtggtttacatttttacattgctgtgcag
||   |   ||   | || || | ||| || |||||||| || |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||       |||||||||    ||  ||||||| | |||| |||| || |    |    || ||| | ||||| || ||  ||||||| |  | |||||
TGAAACCCCAAGCGCCGAAGGGTCACGGCATCTGAGCCAGCGTGAGGCTGCACTGAACAAGTTCCGGCTAAAGAGGAAGGATAGGTGCTTTGAGAAGAAGgta-------agcaactaagtgcgcatttttatttcgatccgattt-ttatgccacc---tactaggacctgtgattcacgcttttacaatcatttgcag

upper sequence: LOC_Os09g36220.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G367834_T01 (Zea mays), 5'ss of exon 7
TGTTCCTGAAAATCCTGATGGTTTACGCCACCTGAGCCAACGAGAGGCTGCACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcacaagcaactaatcttgccattttattccaatccaatttgttgtattgctgaatagtagaaactgtggtttacatttttacattgctgtgcag
||   | | ||   | || |||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||       | | ||| ||    |  ||| ||||||||||||||    || |  ||   || ||| |  |||| ||||    ||| ||||  | |||||
TGAAACCGCAAGAGCCGAAGGTTTACGACACCTGAGCCAGCGTGAGGCTGCACTGAACAAGTTCCGGCTAAAGAGGAAGGACAGATGCTTTGAGAAGAAGgta-------atcgactgattgcacattttcattccaatccaattctcggtgtcact---tactaggacatgtgatttatgcctttgcattcatttgcag

upper sequence: LOC_Os09g36220.2 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv16s0098g00900.t01 (Vitis vinifera), 5'ss of exon 7
TGTTCCTGAAAATCCTGATGGTTTACGCCACCTGAGCCAACGAGAGGCTGCACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcacaagcaactaatcttgccattttattccaatccaatttgttgtattgctgaatagtagaaactgtggttta--catttttacattgctgtgcag
| |        ||   |     |  |  |     | |||| |||| ||||| || | |||||| ||  | ||| |||||||||| |||||||||||||||||| || |  | |  ||  | || | |  |   |       ||    |   |    |  |    |    |||      |  || |||| |||  |  ||   
TATCTTCAGTCATGAAGGACACTCTCAACGATCTATCCAAAGAGAAGCTGCTCTAACCAAGTTTCGCTTGAAGCGGAAAGACAGATGCTTTGAGAAGAAGgtatgttatta-ctgctgttgtttctaaatgtctttttcataaaccatcccac-attttaccccaagttctgcaagacaggcagttttccatcccgatgggc

upper sequence: LOC_Os09g36220.2 (Oryza sativa), 5'ss of exon 7
lower sequence: PP1S412_23V6.1 (Physcomitrella patens), 5'ss of exon 7
TGTTCCTGAAAATCCTGATGGTTTACGCCACCTGAGCCA-ACGAGAGGCTGCACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgta-ggtcacaagcaactaatcttgccattttattcca-atccaatttgttgta--ttgctgaatagtagaaactgtggtttacatttttacattgctgtgcag
 |  |       |    | ||   |       |  |||| ||||||||||||  ||||||||||| |||  ||||| || ||  |||||||||||||||||||| ||          ||  |||||  |||   |         | || | || |  |||    || | | | || |  || |       |   ||| | ||   
-GGGCAACGGGTTGTGCACGGAACAGATACGTTTTGCCAGACGAGAGGCTGCCTTGAACAAGTTCAGGCAGAAGAGAAAGGAGCGGTGCTTTGAGAAGAAGgtacggctttgcatgccttttcttgagattccgtgtggtgatgagttggatggacgttggcacatggaatataccggagtatcggcagcttggttgtt-tg---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29625625|gb|CB630636.1|CB630636
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|218483292|gb|FG957305.1|FG957305
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29683100|gb|CB679375.1|CB679375
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|58690423|gb|CK079110.1|CK079110
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|109712663|gb|CI105271.1|CI105271
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|89170875|gb|CI040152.1|CI040152
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|86434331|gb|CI094674.1|CI094674
EST:     TTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: TTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29687697|gb|CB683972.1|CB683972
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|86887570|gb|CI294204.1|CI294204
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29679637|gb|CB675912.1|CB675912
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29657708|gb|CB653983.1|CB653983
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAA
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|58608805|gb|CK036838.1|CK036838
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|11564750|gb|AU165386.1|AU165386
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|86858658|gb|CI273174.1|CI273174
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29645694|gb|CB650701.1|CB650701
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|163921042|gb|EG710418.1|EG710418
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|86873077|gb|CI328457.1|CI328457
EST:     GTGC-TTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: GTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29670837|gb|CB667112.1|CB667112
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29678108|gb|CB674383.1|CB674383
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29640755|gb|CB645762.1|CB645762
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|86870854|gb|CI326685.1|CI326685
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|88262027|gb|CI365603.1|CI365603
EST:     CACTGAACAAGTTCCGGCTTAAGA-GAAAGACAGGTGC-TTGA-AAGAAG                         GTGCGATACCAGAGCA-GAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|88828782|gb|CI073652.1|CI073652
EST:     TGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: TGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29657709|gb|CB653984.1|CB653984
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|38481670|gb|CF965759.1|CF965759
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|88266360|gb|CI377262.1|CI377262
EST:     GTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAACCTACTAGCCGAGCAGCGACCCCGGGTTAAG
genomic: GTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|2797244|gb|AA750538.1|AA750538
EST:     GGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: GGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29638276|gb|CB643285.1|CB643285
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|86886538|gb|CI322770.1|CI322770
EST:     CACTGAACAAGTTCCGGCTTAAGA-GAAAGACAGGTGCTTTGAGAAGAA-                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|88249085|gb|CI248934.1|CI248934
EST:     AGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: AGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|86425805|gb|CI070902.1|CI070902
EST:     CGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|58692834|gb|CK081521.1|CK081521
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|8856742|gb|AU094060.1|AU094060
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29662771|gb|CB659046.1|CB659046
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|88962830|gb|CI023930.1|CI023930
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|89168836|gb|CI020917.1|CI020917
EST:     CTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|86850833|gb|CI338809.1|CI338809
EST:     AAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: AAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29645662|gb|CB650669.1|CB650669
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|86500501|gb|CI143134.1|CI143134
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|27546169|gb|CA764459.2|CA764459
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|88727695|gb|CI749497.1|CI749497
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29634227|gb|CB639236.1|CB639236
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|88995618|gb|CI022941.1|CI022941
EST:     GTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: GTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29678660|gb|CB674935.1|CB674935
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|88250738|gb|CI348968.1|CI348968
EST:     GACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: GACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|14981126|gb|BI305817.1|BI305817
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29631665|gb|CB636674.1|CB636674
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|218505001|gb|FG965451.1|FG965451
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29679592|gb|CB675867.1|CB675867
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATCCCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|86870323|gb|CI319429.1|CI319429
EST:     ACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: ACTGAACAAGTTCCGGCTTAAGAGGAAAGACA-GGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29656077|gb|CB652352.1|CB652352
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGT
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGT
EST: gi|29640084|gb|CB645093.1|CB645093
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|58593766|gb|CF992074.1|CF992074
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
EST: gi|29659338|gb|CB655613.1|CB655613
EST:     CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAG                         GTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG
genomic: CACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 57 (upstream exon), 71 (downstream exon)
Score: 24

TGTTCCTGAAAATCCTGATGGTTTACGCCACCTGAGCCAACGAGAGGCTGCACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcaca ... tgctgtgcagGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAGGGTCAGTTTGTTCGGCAAGATCATGGTGTCCAAGGGAGCTAGGGCTGTC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTCCTGAAAATCCTGATGGTTTACGCCACCTGAGCCAACGAGAGGCTGCACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCTTTGAGAAGAAGgtaggtcacaagcaactaatcttgccattttattccaatccaatttgttgtattgctgaatagtagaaactgtggtttacatttttacattgctgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG