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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGCCCTCGGCGCCCGCCGCTGGCTCGCCTCGCTCCAGCGACAGTGCCAGTATCTCGCCATCCTCTGCTCCAACTCCCTCCCCGCCCGCGACCACGCTGgtgagctcgccgttcgtgctagtgctagctccggtggccggagttcgatcttactaatggttcttgtggttttgcag

Basic information

species Oryza sativa
transcript LOC_Os09g35760.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g35760.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G116658_T01 (Zea mays), 5'ss of exon 7
CAGGCCCTCGGCGCCCGCCGCTGGCTCGCCTCGCTCCAGCGACAGTGCCAGTATCTCGCCATCCTCTGCTCCAACTCCCTCCCCGCCCGCGACCACGCTGgtgag------ctcgccgttcgtgctagtgctagctccggtggccggagttcgat--cttactaatggttcttgtggttttgcag----------------------
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||      ||  |   ||   | |  | | |     ||  |  |     |||   | || |||||     | |||   |||                       
CAGGCCCTTGGCGCGCGCCGCTGGCTCGCCTCGCTCCAGCGCCAGTGCCAGTACCTCGCCATCCTCTGCTCCAACTCTCTCCCTGCCCGCGACCACGCCGgtgagtaataacttactaatcactccatcgttggtgtgagtaacttgcacgagatggttaaccaatggcgacggcggtga-gcatggatatatatggatttatgcag