1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGCAATTCAAAGTTTGCCTTGAGCATAGAACCAGGAAATAAAGACTTACAGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgctatacaaaccatacatattcatggttttcttgacaatccaattctattacacattattttatgatgtttcttgcttttacttctaaactt...
species | Oryza sativa |
transcript | LOC_Os09g34100.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|33653868|gb|CF276482.1|CF276482
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|86260365|gb|CI066238.1|CI066238
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|86518789|gb|CI158995.1|CI158995
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|33692929|gb|CF321168.1|CF321168
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|29640048|gb|CB645057.1|CB645057
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|396941317|gb|HO188526.1|HO188526
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|88263418|gb|CI367192.1|CI367192
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: CTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGGGCAATCCTTTTGTGAGGACCEST: gi|8404553|gb|AU091907.1|AU091907
genomic: CTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|29669024|gb|CB665299.1|CB665299
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|86875951|gb|CI325519.1|CI325519
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: GCTGATCTCCGCAAGAGGAATACACCCACG GTGCAAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|33680535|gb|CF308774.1|CF308774
genomic: GCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGTAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|86863513|gb|CI345233.1|CI345233
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|86437889|gb|CI119809.1|CI119809
genomic: AGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|29684581|gb|CB680856.1|CB680856
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|33817140|gb|CF334408.1|CF334408
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: GCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|29645268|gb|CB650275.1|CB650275
genomic: GCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|88994083|gb|CI116047.1|CI116047
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACTATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|29645986|gb|CB650993.1|CB650993
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|88248027|gb|CI246645.1|CI246645
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|29656927|gb|CB653202.1|CB653202
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|33680534|gb|CF308773.1|CF308773
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: GGAATACGCTGCAANATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGTAGA-AGAAAGCAGTGCAATCCTTTTCTGAGGACEST: gi|29645569|gb|CB650576.1|CB650576
genomic: GGAATACGCTGCAA-ATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAA-GCAGTGCAATCCTTTTCTGAGGAC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|86429896|gb|CI082319.1|CI082319
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGTATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|86497845|gb|CI140478.1|CI140478
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: GGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCGC-CG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACEST: gi|29663513|gb|CB659788.1|CB659788
genomic: GGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACC-CACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGAC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|33822569|gb|CF337090.1|CF337090
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|86839638|gb|CI340103.1|CI340103
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: ATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|89168436|gb|CI109640.1|CI109640
genomic: ATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: GAGGAATACACCCACG GTGCCAACTACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|30227181|gb|CB965073.1|CB965073
genomic: GAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|29663511|gb|CB659786.1|CB659786
genomic: AATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACCEST: gi|88840699|gb|CI080153.1|CI080153
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACG GTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCC-TTTCTGAGGACCEST: gi|58688129|gb|CK076816.1|CK076816
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
EST: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCAGG GTG-C--CAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
genomic: AGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgc ... tgttcgccagGTGCCAACAACAATTGGGAGAGAGAAGCAGTGCAATCCTTTTCTGAGGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAATTCAAAGTTTGCCTTGAGCATAGAACCAGGAAATAAAGACTTACAGGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGgtattagtgctatacaaaccatacatattcatggttttcttgacaatccaattctattacacattattttatgatgtttcttgcttttacttctaaactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA