1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGgtactcttcttataacaatttgcatttttgtatctgtgaagtctgttttgagttttgttttatgcagaaaagctgttttagatgctttctggcatttggt...
species | Oryza sativa |
transcript | LOC_Os09g32680.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCCTG GG-AATTGTCAATGATACTTACCAGATGGATCTTATTCTCATACACCCACEST: gi|24468776|gb|CA305725.1|CA305725
genomic: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCC-TGgtactcttct ... ttacttgcagGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCAC
EST: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTG GGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCEST: gi|86493556|gb|CI136189.1|CI136189
genomic: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGgtactcttct ... ttacttgcagGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACC
EST: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTG GGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCEST: gi|29660228|gb|CB656503.1|CB656503
genomic: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGgtactcttct ... ttacttgcagGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACC
EST: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTG GGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCEST: gi|29660227|gb|CB656502.1|CB656502
genomic: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGgtactcttct ... ttacttgcagGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACC
EST: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTG GGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCEST: gi|218503593|gb|FG957186.1|FG957186
genomic: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGgtactcttct ... ttacttgcagGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACC
EST: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTG GGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCEST: gi|88833089|gb|CI369979.1|CI369979
genomic: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGgtactcttct ... ttacttgcagGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACC
EST: ATCTGACACAATTTGCCTG GGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCEST: gi|88258947|gb|CI363240.1|CI363240
genomic: ATCTGACACAATTTGCCTGgtactcttct ... ttacttgcagGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACC
EST: CATAACAGATCTGACACAATTTGCCTG GGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCEST: gi|27547661|gb|CA765583.2|CA765583
genomic: CATAACAGATCTGACACAATTTGCCTGgtactcttct ... ttacttgcagGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACC
EST: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTG GGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACC
genomic: GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGgtactcttct ... ttacttgcagGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGgtactcttcttataacaatttgcatttttgtatctgtgaagtctgttttgagttttgttttatgcagaaaagctgttttagatgctttctggcatttggt
- - - - AGGATG
- - - - - ATGCTG