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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAACAAAGAAAGTATATGCTCAATCTTCCCAAGTCAAAAAGGATGTTAACACAAAATACCTTTTCGACTGTCCAAACTCCTGAGTTCTATGAGAAGATgtaagtagtcctggtatgctattattattattatttctgaacacctgaattctcaagtaaataacttgccccccaatgtttatttttttggtgtgcgtta...

Basic information

species Oryza sativa
transcript LOC_Os09g28570.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|287167|gb|D15972.1|D15972
EST:     ACACAAAATACCTTTTCGACTGTCCAAACTCCTGAGTTCTATGAGAAGAT                         AGTTGTTCACACACTTAGCCATAATTTTCGCGATGCTACAAGACTTGAACG
genomic: ACACAAAATACCTTTTCGACTGTCCAAACTCCTGAGTTCTATGAGAAGATgtaagtagtc ... tatcatgcagAGTTGTTCACACACTTAGCCATAATTTTCGCGATGCTACAAGACTTGAACG
EST: gi|88405965|gb|CI591360.1|CI591360
EST:     TGAGTTCTATGAGAAGAT                         AGTTGTTCACACACTTAGCCATAATTTTCGCGATGCTACAAGACTTGAACG
genomic: TGAGTTCTATGAGAAGATgtaagtagtc ... tatcatgcagAGTTGTTCACACACTTAGCCATAATTTTCGCGATGCTACAAGACTTGAACG
EST: gi|58688798|gb|CK077485.1|CK077485
EST:     ACACAAAATACCTTTTCGACTGTCCAAACTCCTGAGTTCTATGAGAAGAT                         AGTTGTTCACACACTTAGCCATAATTTTCGCGATGCTACAAGACTTGAACG
genomic: ACACAAAATACCTTTTCGACTGTCCAAACTCCTGAGTTCTATGAGAAGATgtaagtagtc ... tatcatgcagAGTTGTTCACACACTTAGCCATAATTTTCGCGATGCTACAAGACTTGAACG