1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTAATGGCTCTGTTATTATTGAGACATGCGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCAgtgagtgaaagaatgctctttaactatctggttatcattgttttgttgtacatcatcattagaagttggtattgatgctctattacttgacag
species | Oryza sativa |
transcript | LOC_Os09g24650.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGCTGACTCTAACTGATGAAGATGACGATAATACTTCTGCAATGTTTTCA CTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCTEST: gi|86831029|gb|CI295513.1|CI295513
genomic: CGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCAgtgagtgaaa ... tacttgacagCTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCT
EST: GACGATGATACTTCTGCAATGTTTTCA CTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCTEST: gi|29626393|gb|CB631404.1|CB631404
genomic: GACGATGATACTTCTGCAATGTTTTCAgtgagtgaaa ... tacttgacagCTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCT
EST: CGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCA CTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCTEST: gi|29626392|gb|CB631403.1|CB631403
genomic: CGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCAgtgagtgaaa ... tacttgacagCTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCT
EST: CGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCA CTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCTEST: gi|163925422|gb|EG711559.1|EG711559
genomic: CGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCAgtgagtgaaa ... tacttgacagCTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCT
EST: CGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCA CTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCTEST: gi|218496676|gb|FG944369.1|FG944369
genomic: CGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCAgtgagtgaaa ... tacttgacagCTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCT
EST: CGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCA CTTTTTATATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCTEST: gi|88223285|gb|CI223134.1|CI223134
genomic: CGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCAgtgagtgaaa ... tacttgacagCTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCT
EST: CAATGTTTTCA CTTTTTCTAGTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCT
genomic: CAATGTTTTCAgtgagtgaaa ... tacttgacagCTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAATGGCTCTGTTATTATTGAGACATGCGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCAgtgagtgaaagaatgctctttaactatctggttatcattgttttgttgtacatcatcattagaagttggtattgatgctctattacttgacag
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGATG