1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATAGTATTTCTGCCTCTTCTTACTGCTGCACTTGTGGCTGTTTCTCGAGTGGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAGgtttgcaatttcaataatataacaattatatgcaagaggtcctagcactatctaaaaggaaaaaaaaaatccacaaccatttcttgattctggcatttctcctgttgcag
species | Oryza sativa |
transcript | LOC_Os09g13870.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAG GTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGEST: gi|33666578|gb|CF297545.1|CF297545
genomic: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAGgtttgcaatt ... cctgttgcagGTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATG
EST: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAG GTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGEST: gi|29642304|gb|CB647311.1|CB647311
genomic: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAGgtttgcaatt ... cctgttgcagGTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATG
EST: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAG GTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGEST: gi|29640277|gb|CB645286.1|CB645286
genomic: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAGgtttgcaatt ... cctgttgcagGTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATG
EST: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAG GTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGEST: gi|29641223|gb|CB646230.1|CB646230
genomic: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAGgtttgcaatt ... cctgttgcagGTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATG
EST: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAG GTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGEST: gi|29642639|gb|CB647646.1|CB647646
genomic: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAGgtttgcaatt ... cctgttgcagGTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATG
EST: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAG GTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGEST: gi|29671234|gb|CB667509.1|CB667509
genomic: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAGgtttgcaatt ... cctgttgcagGTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATG
EST: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAG GTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGEST: gi|88984260|gb|CI020176.1|CI020176
genomic: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAGgtttgcaatt ... cctgttgcagGTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATG
EST: TGCAGGCTCTCTGATAG GTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGEST: gi|8858798|gb|AU096116.1|AU096116
genomic: TGCAGGCTCTCTGATAGgtttgcaatt ... cctgttgcagGTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATG
EST: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAG GTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATG
genomic: GGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAGgtttgcaatt ... cctgttgcagGTCTTACAGTCGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGTATTTCTGCCTCTTCTTACTGCTGCACTTGTGGCTGTTTCTCGAGTGGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAGgtttgcaatttcaataatataacaattatatgcaagaggtcctagcactatctaaaaggaaaaaaaaaatccacaaccatttcttgattctggcatttctcctgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG