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GATGCCTATGCTATTCAAAGCAATGAGCGTGGAATTGCTGCTCGGAACAGTGGTGCTTTTGCATGGGAGATTGTTCCGgtgatttcctgtctgccactaattttttttatttattactaaccaaatgctcattaatggcaacagatttcatataaatttaccacaattttgaatttta...
species | Oryza sativa |
transcript | LOC_Os09g07830.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGGAATTGCTGCTCGGAACAGTGGTGCTTTTGCATGGGAGATTGTTCCG ATTGAAGTTCCTGTTGGGAGAGGGAAACCACCAGTACTTGTTGACAAAGAEST: gi|29640957|gb|CB645964.1|CB645964
genomic: GTGGAATTGCTGCTCGGAACAGTGGTGCTTTTGCATGGGAGATTGTTCCGgtgatttcct ... taccatccagATTGAAGTTCCTGTTGGGAGAGGGAAACCACCGGTACTTGTTGACAAAGA
EST: GTGGAATTGCTGCTCGGAACAGTGGTGCTTTTGCATGGGAGATTGTTCCG ATTGAAGTTCCTGTTGGGAGAGGGAAACCACCGGTACTTGTTGACAAAGATEST: gi|33678061|gb|CF306300.1|CF306300
genomic: GTGGAATTGCTGCTCGGAACAGTGGTGCTTTTGCATGGGAGATTGTTCCGgtgatttcct ... taccatccagATTGAAGTTCCTGTTGGGAGAGGGAAACCACCGGTACTTGTTGACAAAGAT
EST: GTGGAATTGCTGCTCGGAACAGTGGTGCTTTTGCATGGGAGATTGTTCCG ATTGAAGTTCCTGTTGGGAGAGGGAAACCACCGGTACTTGTTGACAAAGAT
genomic: GTGGAATTGCTGCTCGGAACAGTGGTGCTTTTGCATGGGAGATTGTTCCGgtgatttcct ... taccatccagATTGAAGTTCCTGTTGGGAGAGGGAAACCACCGGTACTTGTTGACAAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCCTATGCTATTCAAAGCAATGAGCGTGGAATTGCTGCTCGGAACAGTGGTGCTTTTGCATGGGAGATTGTTCCGgtgatttcctgtctgccactaattttttttatttattactaaccaaatgctcattaatggcaacagatttcatataaatttaccacaattttgaatttta
- - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT