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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATAAAAGACTGCGTTTCCTAAGAGCTTCTGGTCCCCTTACAGCAGTTGTGTTTGGAACAATTTTTGTGAAAATTTTCCATCCATCTTCCATATCAGTGgtaagaaacacctacattattctttatatttcttactcttagatgttacaaaatatgagcaatggaagtactttataataagaaatttactctgatcaca...

Basic information

species Oryza sativa
transcript LOC_Os09g06499.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g06499.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G068212_T01 (Zea mays), 5'ss of exon 6
GAATAAAAGACTGCGTTTCCTAAGAGCTTCTGGTCCCCTTACAGCAGTTGTGTTTGGAACAATTTTTGTGAAAATTTTCCATCCATCTTCCATATCAGTGgtaagaaacacctacattattctttatatttcttactcttagatgttacaaaatatgagcaatggaagtactttataataagaaatttactctgatcaca---
 ||||||||| ||| ||| ||||||| ||||||||| ||||| || |||||| |||||||||||||||||||||| || |||||| |  ||||||||||||| ||    |  |  | | |   | | |  | | |    |   ||    || ||||  ||||   ||   |   ||  |    || |  | |  | ||     
CAATAAAAGATTGCATTTTCTAAGAGTTTCTGGTCCTCTTACGGCTGTTGTGCTTGGAACAATTTTTGTGAAAATCTTTCATCCACCAGCCATATCAGTGgtgagttttatttgaagtttgactaaaagatataaagtatgcgtggactaatatatt-gcaaccaaatagc--aatggttgctaactagcacccagcaggcca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643060|gb|CB648067.1|CB648067
EST:     TGTTTGGAACAATTTTTGTGAAAATTTTCCATCCATCTTCCATATCAGTG                         GTAGGTGAAATACCGCAAGGTCTTCCCAAATTCTCCATTCCTCGAGGATTT
genomic: TGTTTGGAACAATTTTTGTGAAAATTTTCCATCCATCTTCCATATCAGTGgtaagaaaca ... gagtgcttagGTAGGTGAAATACCGCAAGGTCTTCCCAAATTCTCCATTCCTCGAGGATTT
EST: gi|29613614|gb|CB618627.1|CB618627
EST:     TGTTTGGAACAATTTTTGTGAAAATTTTCCATCCATCTTCCATATCAGTG                         GTAGGTGAAATACCGCAAGGTCTTCCCAAATTCTCCATTCCTCGAGGATTT
genomic: TGTTTGGAACAATTTTTGTGAAAATTTTCCATCCATCTTCCATATCAGTGgtaagaaaca ... gagtgcttagGTAGGTGAAATACCGCAAGGTCTTCCCAAATTCTCCATTCCTCGAGGATTT