1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGCCTTGCTGCTTTCTACGAGGGATACTACGCTAACAAAGGAATCCATATCATAAAGGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGATgtgagcactctgtagttaccacttagtccagtatcatcttgctgtgaaggcaaatgttcaccttgttaattttttttttctgttggcag
species | Oryza sativa |
transcript | LOC_Os08g44340.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGAT GTTACTGCGGTGAAGCTAAAGAATGGAAACGTGCTGGAAGCTGACATTGTTEST: gi|33691642|gb|CF319881.1|CF319881
genomic: GTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGATgtgagcactc ... ctgttggcagGTTACTGCGGTGAAGCTAAAGAATGGAAACGTGCTGGAAGCTGACATTGTT
EST: TCATAAAGGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGAT GTTACTGCGGTGAAGCTAAAGAATGGAAACGTGCTGGAAGCTGACATTGTCEST: gi|38568445|gb|CD670660.1|CD670660
genomic: TCATAAAGGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGATgtgagcactc ... ctgttggcagGTTACTGCGGTGAAGCTAAAGAATGGAAACGTGCTGGAAGCTGACATTGTT
EST: TCATAAANGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGAT GTTACTGCNGTGAAGCTAAAGAATGGAAACGTGCTGGAAGCTGAEST: gi|33681535|gb|CF309774.1|CF309774
genomic: TCATAAAGGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGATgtgagcactc ... ctgttggcagGTTACTGCGGTGAAGCTAAAGAATGGAAACGTGCTGGAAGCTGA
EST: TCATAAAGGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGAT GTTACTGCGGTGAAGCTAAAGAATGGAAACGTGCTGGAAGCTGACATTGTTEST: gi|29636698|gb|CB641707.1|CB641707
genomic: TCATAAAGGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGATgtgagcactc ... ctgttggcagGTTACTGCGGTGAAGCTAAAGAATGGAAACGTGCTGGAAGCTGACATTGTT
EST: TCATAAAGGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGAT GTTACTGCGGTGAAGCTAAAGAATGGAAACGTGCTEST: gi|66912833|gb|CX099681.1|CX099681
genomic: TCATAAAGGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGATgtgagcactc ... ctgttggcagGTTACTGCGGTGAAGCTAAAGAATGGAAACGTGCT
EST: TCATAAAGGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGAT GTTACTGCGGTGAAGCTAAAGAATGGAAACGTGCTGGAAGCTGACATTGTT
genomic: TCATAAAGGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGATgtgagcactc ... ctgttggcagGTTACTGCGGTGAAGCTAAAGAATGGAAACGTGCTGGAAGCTGACATTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCCTTGCTGCTTTCTACGAGGGATACTACGCTAACAAAGGAATCCATATCATAAAGGGAACCGTGGCTGTTGGTTTTGATGCTGATGCCAATGGAGATgtgagcactctgtagttaccacttagtccagtatcatcttgctgtgaaggcaaatgttcaccttgttaattttttttttctgttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT