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TGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTGgtatggttcaggctcaaaactttattaagccatagtgtacggatagtgtatagataaggaattcattaatttttgtggagataaatctatgttcaaacat...
species | Oryza sativa |
transcript | LOC_Os08g42740.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTG GATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAAEST: gi|29635023|gb|CB640032.1|CB640032
genomic: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTGgtatggttca ... tccttttcagGATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAA
EST: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTG GATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAAEST: gi|29643283|gb|CB648290.1|CB648290
genomic: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTGgtatggttca ... tccttttcagGATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAA
EST: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTG GATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAAEST: gi|29622679|gb|CB627690.1|CB627690
genomic: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTGgtatggttca ... tccttttcagGATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAA
EST: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTG GATACTGGCTAATTCTAAGCCGTGCCCGANATGCAAACGACCAATAGAGAAEST: gi|29671896|gb|CB668171.1|CB668171
genomic: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTGgtatggttca ... tccttttcagGATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAA
EST: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTG GATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAAEST: gi|29669832|gb|CB666107.1|CB666107
genomic: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTGgtatggttca ... tccttttcagGATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAA
EST: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTG GATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAAEST: gi|29643281|gb|CB648288.1|CB648288
genomic: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTGgtatggttca ... tccttttcagGATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAA
EST: GTTTCTAGGCCGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTG GATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAAEST: gi|29677672|gb|CB673947.1|CB673947
genomic: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTGgtatggttca ... tccttttcagGATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAA
EST: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTG GATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAA
genomic: GTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTGgtatggttca ... tccttttcagGATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTGgtatggttcaggctcaaaactttattaagccatagtgtacggatagtgtatagataaggaattcattaatttttgtggagataaatctatgttcaaacat
- - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA