1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATAGTAATGCCGCGAAAGAGGACGATCGCAGATTCTACCTTTATAATGATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcacccattccaatattgtgaacatcatctaccagtacagctttcttctggtttctttcttggataatcagtttctcactttacatatatagaaat...
species | Oryza sativa |
transcript | LOC_Os08g42420.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|29674774|gb|CB671049.1|CB671049
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|218482597|gb|FG970654.1|FG970654
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|7332528|gb|AU085874.1|AU085874
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|86827407|gb|CI272815.1|CI272815
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|29631101|gb|CB636110.1|CB636110
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|86852808|gb|CI323117.1|CI323117
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|87014026|gb|CI273216.1|CI273216
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|29632036|gb|CB637045.1|CB637045
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|86478112|gb|CI120745.1|CI120745
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|33683476|gb|CF311715.1|CF311715
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|87038959|gb|CI193581.1|CI193581
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|33380551|gb|CF195894.1|CF195894
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|29645251|gb|CB650258.1|CB650258
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|29642943|gb|CB647950.1|CB647950
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|86597710|gb|CI274701.1|CI274701
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|29645905|gb|CB650912.1|CB650912
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|86875607|gb|CI323948.1|CI323948
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: TCTTAGAGATTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|86858202|gb|CI271104.1|CI271104
genomic: TCTTAGAG-TTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|29639665|gb|CB644674.1|CB644674
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|29639196|gb|CB644205.1|CB644205
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAG CTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
genomic: ATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcaccc ... tttgtttcagCTGCGTGTGGAACATGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAGTAATGCCGCGAAAGAGGACGATCGCAGATTCTACCTTTATAATGATCTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGgtatgcacccattccaatattgtgaacatcatctaccagtacagctttcttctggtttctttcttggataatcagtttctcactttacatatatagaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG