1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGgtacaattctccacttcttgtacttgtgcaagttcccacctattgtattactactactaaattatgaaatatctttctttctataaatctaaaattggtc...
species | Oryza sativa |
transcript | LOC_Os08g41010.7 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAG GGGTCCAAACCTGATGGTGCAAEST: gi|3763615|gb|AU030367.1|AU030367
genomic: GGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGgtacaattct ... tcttatgcagGGGTCCAAACCTGATGGTGCAA
EST: GGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAG GGGTCCAAACCTGATGGTGCAAGAGGTCCAAEST: gi|86492153|gb|CI134786.1|CI134786
genomic: GGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGgtacaattct ... tcttatgcagGGGTCCAAACCTGATGGTGCAAGAGGTCCAA
EST: GGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAG GGGTCCAAACCTGATGGTGCAAGAGGTCCAAEST: gi|88226642|gb|CI226558.1|CI226558
genomic: GGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGgtacaattct ... tcttatgcagGGGTCCAAACCTGATGGTGCAAGAGGTCCAA
EST: AGACCTGAAAACCAG GGGTCCAAACCTGATGGTGCAAGAGGTCCAAEST: gi|88223683|gb|CI223532.1|CI223532
genomic: AGACCTGAAAACCAGgtacaattct ... tcttatgcagGGGTCCAAACCTGATGGTGCAAGAGGTCCAA
EST: GGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAG GGGTCCAAACCTGATGGTGCAAGAGGTCCAA
genomic: GGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGgtacaattct ... tcttatgcagGGGTCCAAACCTGATGGTGCAAGAGGTCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGgtacaattctccacttcttgtacttgtgcaagttcccacctattgtattactactactaaattatgaaatatctttctttctataaatctaaaattggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccacc