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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGAAAAAGAGACAAATGGAAAAGGTTCACCTCCTTCACGCAGTGTTTCACCATCACCACAGCGTGCTGGCTCCCGTAGCCCAGGTAGTGATGACAAGgtaagtttcagacttaacagctggttatattgtattgttctgcctctgcatgtgttacgtagccatttaacttctggagactaaaattttctttcag

Basic information

species Oryza sativa
transcript LOC_Os08g37960.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g37960.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G110143_T03 (Zea mays), 5'ss of exon 6
TCCTGAAAAAGAGACAAATGGAAAAGGTTCACCTCCTTCACGCAGTGTTTCACCATCACCACAGCGTGCTGGCTCCCGTAGCCCAGGTAGTGATGACAAGgtaagtttcagacttaacagctggttatattgtattgttctgcctctgcatgtgtt-acgtagccatttaacttctggagactaaaattttctttcag
|||||||||  |  | |||||||||| ||||||||  ||||||||||| || ||||||||  |||||||  ||||||| |||||||| || |||  |||||| || ||     ||||| ||| | | | | |  || || | ||  ||||| |||| | || ||    | ||   || |  | |    ||  | ||||
TCCTGAAAAGCATGCCAATGGAAAAGATTCACCTCTGTCACGCAGTGTATCTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAGgttagattggtgtttaactgcttgctttgtagggtttttttacccatgcatttgtttatgttgc----ttacacttgaaagcaa----ttcatgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89186720|gb|CI052133.1|CI052133
EST:     CACCATCACCACAGCGTGCTGGCTCCCGTAGCCCAGGTAGTGATGACAAG                         GAATAAAGTTTGTTGATCCAGTGATGCTTAAGAAGAGTCTTCAAATTGGAC
genomic: CACCATCACCACAGCGTGCTGGCTCCCGTAGCCCAGGTAGTGATGACAAGgtaagtttca ... tttctttcagGAATAAAGTTTGTTGATCCAGTGATGCTTAAGAAGAGTCTTCAAATTGGAC