1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCAGCACAAGAACATAACCATTCTGCTACTGATTCCAGCTTCATCTCTAATAAATGGAGATGATGGCATTGCTCATGTGAAGAGACATCTTCTTGAAAATgtgagtggcccttgcataatttccacccttttcatgatttcttgatgcggtactgagctcaagcaggccatgttgaatgaaaataagaaatattctcatgtctggtgtggcttgcaaaatattgatactgtggttgtgaacacatgctcatttttttatatttatattgcag
species | Oryza sativa |
transcript | LOC_Os08g33076.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TAAATGGAGATGATGGCATTGCTCATGTGAAGAGACATCTTCTTGAAAAT GCATCACAGAACATTGTGACTCTGGAGCTGAAATTATCACGAGGATGGGGAEST: gi|29621123|gb|CB626134.1|CB626134
genomic: TAAATGGAGATGATGGCATTGCTCATGTGAAGAGACATCTTCTTGAAAATgtgagtggcc ... tatattgcagGCATCACAGAACATTGTGACTCTGGAGCTGAAATTATCACGAGGATGGGGA
EST: AATGGAGATGATGGCATTGCTCATGTGAAGAGACATCTTCTTGAAAAT GCATCACAGAACATTGTGACTCTGGAGCTGAAATTATCACGAGGATGGGGAEST: gi|58688978|gb|CK077665.1|CK077665
genomic: AATGGAGATGATGGCATTGCTCATGTGAAGAGACATCTTCTTGAAAATgtgagtggcc ... tatattgcagGCATCACAGAACATTGTGACTCTGGAGCTGAAATTATCACGAGGATGGGGA
EST: TAAATGGAGATGATGGCATTGCTCATGTGAAGAGACATCTTCTTGAAAAT GCATCACAGAACATTGTGACTCTGGAGCTGAAATTATCACGAGGATGGGGAEST: gi|29662693|gb|CB658968.1|CB658968
genomic: TAAATGGAGATGATGGCATTGCTCATGTGAAGAGACATCTTCTTGAAAATgtgagtggcc ... tatattgcagGCATCACAGAACATTGTGACTCTGGAGCTGAAATTATCACGAGGATGGGGA
EST: AATGGAGATGATGGCATTGCTCATGTGAAGAGACATCTTCTTGAAAAT GCATCACAGAACATTGTGACTCTGGAGCTGAAATTATCACGAGGATGGGGA
genomic: AATGGAGATGATGGCATTGCTCATGTGAAGAGACATCTTCTTGAAAATgtgagtggcc ... tatattgcagGCATCACAGAACATTGTGACTCTGGAGCTGAAATTATCACGAGGATGGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCACAAGAACATAACCATTCTGCTACTGATTCCAGCTTCATCTCTAATAAATGGAGATGATGGCATTGCTCATGTGAAGAGACATCTTCTTGAAAATgtgagtggcccttgcataatttccacccttttcatgatttcttgatgcggtactgagctcaagcaggccatgttgaatgaaaataagaaatattctcatgtctggtgtggcttgcaaaatattgatactgtggttgtgaacacatgctcatttttttatatttatattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA