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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAGgtattcctgatttttaatcaaaatgactgcatcaagatgaaaatttcttacataagttactgctgtctgacaaacaaggctcctcaattatttctgtctc...

Basic information

species Oryza sativa
transcript LOC_Os08g32630.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32630.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G851815_T02 (Zea mays), 5'ss of exon 7
GTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAGgtattcctgatttttaatcaaaatgactgcatcaagatgaaaatttcttacataagttactgctgtctgacaaacaaggctcct--caattatttctgtctc
||| | ||  | |||||||||| |||| || |||| ||||||||| ||||||||||||| |||||||| ||||| || || |||||||||    |        ||  |  |   ||           ||| |  |  || ||  ||   |  || |      | |  |  ||| |  |     |  
GTACTGAAACTTAGTGATGGTGATTCTTTGTCTTGCCGACTTGTTGTTGATGCTATGGGAAATTTTTCTCCAATAGTACGGCAGgtattcaaagtcacatcataacttagccatattctcccttgtttttttctcg-aacttgttgaaattagaaatctgttggttgtggcaactggtaaccaca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29670150|gb|CB666425.1|CB666425
EST:     CCCAATTGTGCGACAG                         ATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGT
genomic: CCCAATTGTGCGACAGgtattcctga ... cttatccaagATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGT
EST: gi|29676352|gb|CB672627.1|CB672627
EST:     GTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAG                         ATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGT
genomic: GTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAGgtattcctga ... cttatccaagATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGT
EST: gi|300215548|gb|HO088174.1|HO088174
EST:     GTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAG                         ATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGT
genomic: GTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAGgtattcctga ... cttatccaagATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGT
EST: gi|58656158|gb|CK044838.1|CK044838
EST:     GTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAG                         ATCCGGTCAGGCAGAAAACCGAGATGGAGTATGCCTTGTTGTTGGTACTTG
genomic: GTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAGgtattcctga ... cttatccaagATCCGGTCAGGCAGAAAACC-AGATGGAGTATGCCTTGTTGTTGGTACTTG