Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATTAAGGTTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattctctttgccctttttttggctgcttttgttttaagtcttatttttggagatgtgctgaagtttgtaacgtgctgccag

Basic information

species Oryza sativa
transcript LOC_Os08g31840.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g31840.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G047223_T02 (Zea mays), 5'ss of exon 7
GGCATTAAGGTTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattctctttgcccttt---ttttggctgcttttgt-tttaagtcttatttttggagatgtgctgaagtttgtaacgtgctgccag
|| ||||||||||||||||||||||||||||||||||||||| | || || ||||| || || | |||| | | |   || |   ||  |  ||      | ||| |  |  || ||  ||||  | ||||| ||| || | | | | |||
GGTATTAAGGTTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattttgtattttctgtcacttccgcttgaaaccatgtttgaaacaaatatt--gagaaatactgaatttt-tatcctaccgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|325493709|gb|JG458233.1|JG458233
EST:     CAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTG                         GTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
genomic: CAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattc ... gtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
EST: gi|88557068|gb|CI487446.1|CI487446
EST:     GATTTTGCCATGATGAATTG                         GTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
genomic: GATTTTGCCATGATGAATTGgtgaatattc ... gtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
EST: gi|86883180|gb|CI328639.1|CI328639
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTG                         GTCAAATTCCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattc ... gtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
EST: gi|88548655|gb|CI476470.1|CI476470
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTG                         GTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattc ... gtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
EST: gi|88295035|gb|CI522989.1|CI522989
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTG                         GTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattc ... gtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
EST: gi|88528600|gb|CI456848.1|CI456848
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTG                         GTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattc ... gtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA