1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTGTGAAGCATACAACCTTGGAACTGGTAAAGGTACCTCTGTGCTGGAGATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAGgtatgctagattgatgtataatatgggaaattatctttttccactaactaggtgcattttaaggcacagtacttttctgtcatggtagtactaatcagta...
species | Oryza sativa |
transcript | LOC_Os08g28730.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAG AAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTAEST: gi|29644199|gb|CB649206.1|CB649206
genomic: GATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAGgtatgctaga ... gctgtgctagAAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTA
EST: GTACCTCTGTGCTGGAGATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAG AAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTAEST: gi|29673347|gb|CB669622.1|CB669622
genomic: GTACCTCTGTGCTGGAGATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAGgtatgctaga ... gctgtgctagAAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTA
EST: GTACCTCTGTGCTGGAGATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAG AAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTAEST: gi|58686188|gb|CK074875.1|CK074875
genomic: GTACCTCTGTGCTGGAGATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAGgtatgctaga ... gctgtgctagAAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTA
EST: GTACCTCTGTGCTGGAGATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAG AAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTAEST: gi|29682808|gb|CB679083.1|CB679083
genomic: GTACCTCTGTGCTGGAGATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAGgtatgctaga ... gctgtgctagAAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTA
EST: GTACCTCTGTGCTGGAGATAGTCAAGGCATTTGAGAAGGCTTTTGGGAAG AAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTAEST: gi|29673348|gb|CB669623.1|CB669623
genomic: GTACCTCTGTGCTGGAGATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAGgtatgctaga ... gctgtgctagAAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTA
EST: GTACCTCTGTGCTGGAGATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAG AAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTA
genomic: GTACCTCTGTGCTGGAGATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAGgtatgctaga ... gctgtgctagAAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTGAAGCATACAACCTTGGAACTGGTAAAGGTACCTCTGTGCTGGAGATAGTCAAGGCATTTGAGAAGGCTTCTGGGAAGgtatgctagattgatgtataatatgggaaattatctttttccactaactaggtgcattttaaggcacagtacttttctgtcatggtagtactaatcagta
- - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGAT