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AAACTGCCTATACTGCAGGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattattttgcctgttgaacttcattgctctcttttatgtctactgccatcagaggatgagagttttaccaagcagttctctgattttgtctgtcgctg...
species | Oryza sativa |
transcript | LOC_Os08g26870.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86428772|gb|CI075453.1|CI075453
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86841671|gb|CI337368.1|CI337368
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: AGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86870797|gb|CI323841.1|CI323841
genomic: AGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACA-TGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86866657|gb|CI343508.1|CI343508
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|89182212|gb|CI113581.1|CI113581
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|88219539|gb|CI219099.1|CI219099
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86845296|gb|CI340393.1|CI340393
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: TTCGCTGC-A- GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86545503|gb|CI185709.1|CI185709
genomic: TTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86486764|gb|CI129397.1|CI129397
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: TCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|88843827|gb|CI011085.1|CI011085
genomic: TCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: AGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86424485|gb|CI063246.1|CI063246
genomic: AGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86881486|gb|CI322571.1|CI322571
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: AAGACCGTCAGATGCCATAAACAGTGGCTGTTCGCTGCAA- GTTCCTATACAA-TCCATAGAAGCCTT-CATACAGTGATGGCATAAGATCAEST: gi|29667115|gb|CB663390.1|CB663390
genomic: AAGACCTTCAGATGCCATAAACA-TTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: ATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|89194098|gb|CI116535.1|CI116535
genomic: ATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: ATCTAAGACCTTCAGATGCCATGAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86535591|gb|CI175797.1|CI175797
genomic: ATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|88221407|gb|CI221363.1|CI221363
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|33656426|gb|CF279040.1|CF279040
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|88844616|gb|CI021191.1|CI021191
genomic: CTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86535529|gb|CI175735.1|CI175735
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|30228832|gb|CB966723.1|CB966723
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86853630|gb|CI330481.1|CI330481
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: TCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|89182723|gb|CI114092.1|CI114092
genomic: TCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: TTTGATCTAAGACCTTCAGATGACATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGAGTCEST: gi|23514436|gb|BU673639.1|BU673639
genomic: TTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGA-TC
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCNTTGCATACAGTGATGGCATAAGATCAEST: gi|89175204|gb|CI111723.1|CI111723
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86522948|gb|CI163154.1|CI163154
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|88217099|gb|CI216948.1|CI216948
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86841645|gb|CI337352.1|CI337352
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: AGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86884643|gb|CI313022.1|CI313022
genomic: AGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: TAAGACCTTCAGATGCCATAAACATTGCTGTTCGGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCEST: gi|86418718|gb|CI053519.1|CI053519
genomic: TAAGACCTTCAGATGCCATAAACATTGCTGTTC-GCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATC
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|88833609|gb|CI077090.1|CI077090
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: AAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCEST: gi|58030519|gb|CX728062.1|CX728062
genomic: AAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCC-TATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATC
EST: ATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86433857|gb|CI094200.1|CI094200
genomic: ATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|89161725|gb|CI100885.1|CI100885
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|86867122|gb|CI343891.1|CI343891
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|15855809|gb|BI808621.1|BI808621
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: TGTGATGCTAAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: TTTGAT-CT-AAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACTGCCTATACTGCAGGTAGGTGACCATACAGAAAGTATCACCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattattttgcctgttgaacttcattgctctcttttatgtctactgccatcagaggatgagagttttaccaagcagttctctgattttgtctgtcgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT