Sequence
atgc intronic sequence ATGC exonic sequenceGGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCACTTTGTTTCCACGCGTACCAACAGgttagtcatgcatgctgtcgttttttcatgtttggtcatatacatgtttagttgggatagttgatagttctgtttatggttcaaatgccagaaagtgcat...
Basic information
species | Oryza sativa |
transcript | LOC_Os08g25624.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os08g25624.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G174107_T02 (Zea mays), 5'ss of exon 7
------------------------------GGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCACTTTGTTTCCACGCGTACCAACAGgttagtcatgcatgctgtcgttttttcatgtttggtcatatacatgtttagttg-ggatagttgatagttctgtttatggttcaaatgccagaaagtgcat-
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GGTTAATTTTGATTGGCTTTGTGTTTGTAGGGTCTGAATGTAAACCAAGTCCTTACAAGGTGTCTTTTCGCTGGACTGTGTTTCCATGCATACCAACAGgttagtcatgt-tact-ccatgtacttggggatatatatcaatatcttgagttgtagactgcagtgtgttatctatttgatttttgatgtttcagttttatg
upper sequence: LOC_Os08g25624.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G174107_T01 (Zea mays), 5'ss of exon 7
GGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCACTTTGTTTCCACGCGTACCAACAGgttagtcatgcatgctgtcgttttttcatgtttggtcatatacatgtttagttg-ggatagttgatagttctgtttatggttcaaatgccagaaagtgcat-
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GGTCTGAATGTAAACCAAGTCCTTACAAGGTGTCTTTTCGCTGGACTGTGTTTCCATGCATACCAACAGgttagtcatgt-tact-ccatgtacttggggatatatatcaatatcttgagttgtagactgcagtgtgttatctatttgatttttgatgtttcagttttatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|55409510|gb|CV721886.1|CV721886EST: TGCTTACAAGGTCTTTACTTGCTGCACTTTGTTTCCACGCGTACCAACAG GCTGGCAGCTAGCTTGTTTTCACTTCAAGTGGCAGTTGGATTCCATGGC
genomic: TGCTTACAAGGTCTTTACTTGCTGCACTTTGTTTCCACGCGTACCAACAGgttagtcatg ... ggtatggcagGCTGGCAGCTAGCTTGTTTTCACTTCAAGTGGCAGTTGGATTCCATGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCACTTTGTTTCCACGCGTACCAACAGgttagtcatgcatgctgtcgttttttcatgtttggtcatatacatgtttagttgggatagttgatagttctgtttatggttcaaatgccagaaagtgcat
- - - - - - - - - - - - - - - - - - - TGCTGC