1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GACCAGCAATTCCGCAAGATGCTAGCATGGAAAGCTTTCCAACATGTCGCTTCTTATGATTCAGCTGTCTCAGAATGGTTGTGGAAGCAATCGAACAAAGgtattaacactaactttttgtaatgatctagtttatatatgatggttttgtcaacatttcctcagatatcattacactatcatgttctcatgtag
species | Oryza sativa |
transcript | LOC_Os08g10570.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCTTATGATTCAGCTGTCTCAGAATGGTTGTGGAAGCAATCGAACAAAG GAGATGTATTCCCCCCGAACTTCACCGTGCCCCTGTCCCTGAAATCTACACEST: gi|29666407|gb|CB662682.1|CB662682
genomic: TTCTTATGATTCAGCTGTCTCAGAATGGTTGTGGAAGCAATCGAACAAAGgtattaacac ... tctcatgtagGAGATGTATTCCCCCCGAACTTCACCGTGCCCCTGTCCCTGAAATCTACAC
EST: TTCTTATGATTCAGCTGTCTCAGAATGGTTGTGGAAGCAATCGAACAAAG GAGATGTATTCCCCCCGAACTTCACCGTGCCCCTGTCCCTGAAATCTACACEST: gi|87009755|gb|CI310858.1|CI310858
genomic: TTCTTATGATTCAGCTGTCTCAGAATGGTTGTGGAAGCAATCGAACAAAGgtattaacac ... tctcatgtagGAGATGTATTCCCCCCGAACTTCACCGTGCCCCTGTCCCTGAAATCTACAC
EST: TTCTTATGATTCAGCTGTCTCAGAATGGTTGTGGAAGCAATCGAACAAAG GAGATGTATTCCCCCCEST: gi|29666340|gb|CB662615.1|CB662615
genomic: TTCTTATGATTCAGCTGTCTCAGAATGGTTGTGGAAGCAATCGAACAAAGgtattaacac ... tctcatgtagGAGATGTATTCCCCCC
EST: TTCTTATGATTCAGCTGTCTCAGAATGGTTGTGGAAGCAATCGAACAAAG GAGATGTATTCCCCCCGAACTTCACCGTGCCCCTGTCCCTGAAATCTACAC
genomic: TTCTTATGATTCAGCTGTCTCAGAATGGTTGTGGAAGCAATCGAACAAAGgtattaacac ... tctcatgtagGAGATGTATTCCCCCCGAACTTCACCGTGCCCCTGTCCCTGAAATCTACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCAGCAATTCCGCAAGATGCTAGCATGGAAAGCTTTCCAACATGTCGCTTCTTATGATTCAGCTGTCTCAGAATGGTTGTGGAAGCAATCGAACAAAGgtattaacactaactttttgtaatgatctagtttatatatgatggttttgtcaacatttcctcagatatcattacactatcatgttctcatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA