Sequence
atgc intronic sequence ATGC exonic sequenceACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTAGGTGTCTTGCTGCATTCCCGGATCAACAAGGATTTTTGgtaatgcaacttttttttgtaaaaatttctagtctattctaaatgcttaaatagataactattctagcaatgcattgttatgtacttatggtctttttct...
Basic information
species | Oryza sativa |
transcript | LOC_Os08g07960.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os08g07960.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G058498_T01 (Zea mays), 5'ss of exon 7
ACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTAGGTGTCTTGCTGCATTCCCGGATCAACAAGGATTTTTGgtaatgcaacttttttttgtaaaaatttctagtctattctaaatgcttaaatagataactattctagcaatgcattgtta-tgtactt-atggtctttttct---
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ACGGAGTTCAAGCGAATCCAATCACCACTAAAATACCAGACACGGTGCCTTGCTGCATTCCCTGATCAACAAGGGTTTTTGgtaat---actttattttggaatgtccttta--ctgccacattcattaaacctagcttcttctgtataagcctatttttagtgtgcttcacaaacagattattta
upper sequence: LOC_Os08g07960.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA08G19260.1 (Glycine max), 5'ss of exon 6
ACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTAGGTGTCTTGCTGCATTCCCGGATCAACAAGGATTTTTGgtaatgcaacttttttttgtaaaaatttctagtctattctaa----atgcttaaatagataactattctagcaatgcattgttatgtacttatggtctttttct
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GTTGAATTCAAGAGAATTGTTTCACCATTAAAGTATCAAACAAGGTGCCTTGCTGCATTCCCTGATCAACAAGGTTTCTTGgta-tgcatctttcctatctttattttatcagtgaaaagtaatatcatgtttccaacagtgg--gttcctattttgtatctagaaggacttattttctgtaac-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|218501857|gb|FG946082.1|FG946082EST: AATACCAGACTAGGTGTCTTGCTGCATTCCCGGATCAACAAGGATTTTTG GTGGGTTCCATAGAAGGAAGAGTTGGTGTGCATCATATTGATGACTCACAG
genomic: AATACCAGACTAGGTGTCTTGCTGCATTCCCGGATCAACAAGGATTTTTGgtaatgcaac ... ttgtttcaagGTGGGTTCCATAGAAGGAAGAGTTGGTGTGCATCATATTGATGACTCACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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ACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTAGGTGTCTTGCTGCATTCCCGGATCAACAAGGATTTTTGgtaatgcaacttttttttgtaaaaatttctagtctattctaaatgcttaaatagataactattctagcaatgcattgttatgtacttatggtctttttct
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