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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGCTATGGAACTTCAATACATGGGACCTCTGAACAAAGATCCAGCTTTGGAGTATATGCTACTTCAGGCTGTGAGATTTGCCTTCAGAATGCATCAGgtaacacatttctagcaggaactccacaaaaagaaaattcccctgtgcatactgcatactccattctgattagatgtatacttgggcaattatgttatac...

Basic information

species Oryza sativa
transcript LOC_Os08g03560.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g03560.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G019225_T01 (Zea mays), 5'ss of exon 8
AGTTGCTATGGAACTTCAATACATGGGACCTCTGAACAAAGATCCAGCTTTGGAGTATATGCTACTTCAGGCTGTGAGATTTGCCTTCAGAATGCATCAGgtaacacatttct-----agcaggaact----------ccacaaaaagaaaattcccctgtgcatactgcatactccattctgattag-atgtatacttgggcaattatgttatac
 ||||| ||||| ||||| |||||||| ||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |     | ||  || |           |||   | |  ||| |  ||||   |  |   | || ||| ||  | ||  | || |    |   ||| | ||  | 
GGTTGCAATGGAGCTTCAGTACATGGGTCCTCTGAACAAGGATCCAGCTCTGGAGTACATGCTGCTTCAGGCTGTGAGATTTGCCTTCAGGATGCATCAGgtaacaaatttgttggtaaacaaaaattatttcccttatcacgggacgggaat-ctactgtctttgttaagt-ctgcatgctcttcagcgtttaaatccagctcatttt-ttgcag

upper sequence: LOC_Os08g03560.2 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv10s0003g05680.t01 (Vitis vinifera), 5'ss of exon 6
AGTTGCTATGGAACTTCAATACATGGGACCTCTGAACAAAGATCCAGCTTTGGAGTATATGCTACTTCAGGCTGTGAGATTTGCCTTCAGAATGCATCAGgtaacacatttctagcaggaactccacaaaaagaaaattcccctgt------gcatactgcatactccattctgattagatgtatacttgggcaattatgttatac
 || |||||||||||||| | || |||  |  |  | |||||||||||  |||| |||||||| || ||||  ||||||||||| |||||||| ||||||||      |     |||  |||   | |||  ||| || | |||||      |   | |    ||  |   |||     |  | |   |    || ||| ||    
GGTAGCTATGGAACTTCAGTCCAAGGGGGCATTTGAAAAAGATCCAGCAATGGACTATATGCTGCTCCAGGGAGTGAGATTTGCTTTCAGAATTCATCAGgtt---tgtaaaatgcattaacaataaaaatcgaagatactcctgttttaaggagcagtagggacggccccctgtagctacatctcactacaaaactatattg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33808425|gb|CF330101.1|CF330101
EST:     TGGAGTATATGCTACTTCAGGCTGTGAGATTTGCCTTCAGAATGCATCAG                         TTTGCTGGGGGATTCGATCCAGAGACCATGGATGCATTTGAAGAGCTGAGG
genomic: TGGAGTATATGCTACTTCAGGCTGTGAGATTTGCCTTCAGAATGCATCAGgtaacacatt ... atttttgcagTTTGCTGGGGGATTCGATCCAGAGACCATGGATGCATTTGAAGAGCTGAGG
EST: gi|33811209|gb|CF331494.1|CF331494
EST:     TGGAGTATATGCTACTTCAGGCTGTGAGATTTGCCTTCAGAATGCATCAG                         TTTGCTGGGGGGATTCGATCCAGAGACCATGGATGCATTTGAAGAGCTGAG
genomic: TGGAGTATATGCTACTTCAGGCTGTGAGATTTGCCTTCAGAATGCATCAGgtaacacatt ... atttttgcagTTTGCTGGGGG-ATTCGATCCAGAGACCATGGATGCATTTGAAGAGCTGAG