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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCAAAAGTGTACGAGATGGAGGCAAAGCTGTTATGATTGGCCTTGCTGCCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaactagctccaatgaagtactattgacttggttttctaagaaagagaagagagatactaataccttcttggtacaaacagcaaagccatttga...

Basic information

species Oryza sativa
transcript LOC_Os08g01760.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g01760.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G024303_T01 (Zea mays), 5'ss of exon 7
CGCCAAAAGTGTACGAGATGGAGGCAAAGCTGTTATGATTGGCCTTGCTGCCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaactagctccaatgaagtactattgacttggttttctaagaaagagaagagagatactaataccttcttggtacaaacagcaaagccatttga
|||||| || || || ||||||||||||||||||||||| || |||||||| || || || ||||| ||||| ||||||||||||||||| || |||||||||  | || |   |||       | ||  ||  |||   |||   |           |    || ||   |  |||| || |                 
CGCCAAGAGCGTGCGTGATGGAGGCAAAGCTGTTATGATCGGGCTTGCTGCAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAGgtat-gcaattgattccttgttcatccttctgtattgtggttccttgtcc--------atccgctcatgtttatttggaaccag----------------

upper sequence: LOC_Os08g01760.1 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv07s0031g03150.t01 (Vitis vinifera), 5'ss of exon 7
CGCCAAAAGTGTACGAGATGGAGGCAAAGCTGTTATGATTGGCCTTGCTGCCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaactagctccaatgaagtactattga--cttggttttctaagaaagagaagagagata---ctaataccttcttggtacaaacagcaaagccatttga
| || ||||||||||||||||||| |||||||| |||||||| ||| |     |   ||   | |||||| | |||||||  || ||||||||| |||||||| | |   |   ||     |   | | || |   || ||||  || ||  |       || ||   |||||   ||  || |    | ||||    |      
CACCCAAAGTGTACGAGATGGAGGAAAAGCTGTAATGATTGGACTTACGAAATCTGGTGCTGTAGGGGAGATAGATATAAATCGCCTTGTTCGCAGACAGgtatatatcttctttctgccaatagattttttaatttttgtttcatatgagtgtttgattaggtaagtctaatggattactg-tcttgatagcatcatctc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88836378|gb|CI078275.1|CI078275
EST:     CCACAAATGTGATGGGGGAGGTGGATATAGCCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86436111|gb|CI117833.1|CI117833
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88976898|gb|CI257594.1|CI257594
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88246986|gb|CI246835.1|CI246835
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88907686|gb|CI091084.1|CI091084
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86502042|gb|CI144675.1|CI144675
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|89192249|gb|CI049710.1|CI049710
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88908034|gb|CI090630.1|CI090630
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCACTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86432274|gb|CI085885.1|CI085885
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|13806004|gb|AU181306.1|AU181306
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88838264|gb|CI373624.1|CI373624
EST:     CCACAAATGTGATGGGGGAGGT-GATATAACCCTTCTT-TTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|5038974|gb|AU071084.1|AU071084
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86426746|gb|CI071843.1|CI071843
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88197083|gb|CI196933.1|CI196933
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86255514|gb|CI065191.1|CI065191
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88265629|gb|CI376531.1|CI376531
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGTTCGTATGGTGC-AGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86425462|gb|CI070559.1|CI070559
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86431747|gb|CI085358.1|CI085358
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88290972|gb|CI545069.1|CI545069
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88838408|gb|CI373768.1|CI373768
EST:     CCACAAATGTGAT-GGGGAGGTGGATATAACCCGTCTTGTTCGCCCACAG                         GTGAAGATCATTGGGTCGTAT-GTGCAAGGGCCAGGCAAGATCTTCCTCAT
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88908373|gb|CI090966.1|CI090966
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88366612|gb|CI556396.1|CI556396
EST:     GGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: GGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|58682874|gb|CK071561.1|CK071561
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|89193154|gb|CI050452.1|CI050452
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|87030108|gb|CI111804.1|CI111804
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88837935|gb|CI371513.1|CI371513
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCCTCTTGTTCCCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86414410|gb|CI068813.1|CI068813
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88960305|gb|CI382183.1|CI382183
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCCCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88907568|gb|CI090362.1|CI090362
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88902819|gb|CI088357.1|CI088357
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88428351|gb|CI562617.1|CI562617
EST:     GGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: GGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86503463|gb|CI146096.1|CI146096
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86432655|gb|CI086266.1|CI086266
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86412688|gb|CI067093.1|CI067093
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86512265|gb|CI154898.1|CI154898
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88833764|gb|CI077245.1|CI077245
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|87029394|gb|CI250327.1|CI250327
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88215390|gb|CI215239.1|CI215239
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88833581|gb|CI077062.1|CI077062
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86412804|gb|CI067209.1|CI067209
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACGG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|89185739|gb|CI047608.1|CI047608
EST:     GGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: GGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88297907|gb|CI555922.1|CI555922
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88205986|gb|CI205835.1|CI205835
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88563442|gb|CI494159.1|CI494159
EST:     ATATAACCCGTCTTTTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAANATCTTCCTCAG
genomic: ATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88249185|gb|CI249034.1|CI249034
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88849640|gb|CI089746.1|CI089746
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88460510|gb|CI531983.1|CI531983
EST:     TTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: TTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88248907|gb|CI247991.1|CI247991
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86429474|gb|CI076155.1|CI076155
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86429492|gb|CI076173.1|CI076173
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88275760|gb|CI396364.1|CI396364
EST:     CCACAAATGTCATGGGGGAGGTGGATATAACCCCTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGC-AGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86432608|gb|CI086219.1|CI086219
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|58588843|gb|CF987151.1|CF987151
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86425055|gb|CI070152.1|CI070152
EST:     CCACGAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86414871|gb|CI069274.1|CI069274
EST:     CCACAAATGTGGTGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|58684280|gb|CK072967.1|CK072967
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86423933|gb|CI062694.1|CI062694
EST:     GTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: GTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|89189273|gb|CI048812.1|CI048812
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88836365|gb|CI078262.1|CI078262
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88903524|gb|CI089062.1|CI089062
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88409236|gb|CI559334.1|CI559334
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86427623|gb|CI072720.1|CI072720
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|94362588|gb|CI052707.1|CI052707
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|87034435|gb|CI189059.1|CI189059
EST:     GATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCCTCCTCAG
genomic: GATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|88443935|gb|CI552480.1|CI552480
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
EST: gi|86497826|gb|CI140459.1|CI140459
EST:     CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAG                         GTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG
genomic: CCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 43

CGCCAAAAGTGTACGAGATGGAGGCAAAGCTGTTATGATTGGCCTTGCTGCCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaac ... atgggaccagGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCAGGCAAGATCTTCCTCAGATAGTCAAGCTTGCAGAGAGTGGGGCCTTCAATCTTAAGAACACCATAT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCAAAAGTGTACGAGATGGAGGCAAAGCTGTTATGATTGGCCTTGCTGCCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaactagctccaatgaagtactattgacttggttttctaagaaagagaagagagatactaataccttcttggtacaaacagcaaagccatttga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA