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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAGgtaattcttttaaagtggttctttcaatgcttgtatttgctgtatgtgtttgagcctagcaacaagatatgtgaaatcttgcaatggcagcaaaaggtgg...

Basic information

species Oryza sativa
transcript LOC_Os07g49270.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g49270.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G134396_T02 (Zea mays), 5'ss of exon 6
TGCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAGgtaattcttttaaagtg-gttctttcaa--tgcttgtatttgctgtatgtgtttgagcctagcaacaagatatgtgaaatcttgcaatggcagcaaaaggtgg
||| |||||||| |||||||||||||||||  |||||||||||||||||||||||||||| ||||| || ||| || | ||||||||||||||||| || |||||| |||||   |  |||||||  |  ||  |||  || ||| ||| || | |     | || | | | |   ||     ||     || | ||   || 
TGCAACTACCTTCTTTACTGATATGCACTACGTCCTTCGTGTGTTGGCTGCTGGGGATATCCGAACCGTGTGTCATCACCGTTTAAATCTTCTAGAGCAAgtaatttttttatgttatgttctttttaactgtgtgttctttctgcatgagtataaa---ggaaaaatgttgtcctaatgacagcctgttcatcgaagcatgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58696016|gb|CK084703.1|CK084703
EST:     CTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG                         AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAG
genomic: CTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAGgtaattcttt ... gatttttcagAAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAG
EST: gi|58609363|gb|CK037396.1|CK037396
EST:     CTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG                         AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAG
genomic: CTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAGgtaattcttt ... gatttttcagAAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAG
EST: gi|33679011|gb|CF307250.1|CF307250
EST:     CTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG                         AAATTCAATCTTTATTTTATGGTCAATGCCGATAGAGAACTACTTGCTCAG
genomic: CTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAGgtaattcttt ... gatttttcagAAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAG